Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5748 | 5' | -60.9 | NC_001806.1 | + | 121854 | 0.66 | 0.697038 |
Target: 5'- -gCGCCGGGUGGcgccugugugucuucUCuucguacauCAGUCGCCUa-- -3' miRNA: 3'- uaGCGGCCCACC---------------AG---------GUCAGCGGAguc -5' |
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5748 | 5' | -60.9 | NC_001806.1 | + | 23960 | 0.66 | 0.683287 |
Target: 5'- -cCGCCGGaGUGGUCCGccgagCGCggCGGg -3' miRNA: 3'- uaGCGGCC-CACCAGGUca---GCGgaGUC- -5' |
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5748 | 5' | -60.9 | NC_001806.1 | + | 27833 | 0.66 | 0.663512 |
Target: 5'- -gCGCCGGGuUGGUCCccggggacggGGcCGCCccgCGGu -3' miRNA: 3'- uaGCGGCCC-ACCAGG----------UCaGCGGa--GUC- -5' |
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5748 | 5' | -60.9 | NC_001806.1 | + | 75365 | 0.67 | 0.593941 |
Target: 5'- -aCGCgCGGGUGG-CCA-UCGCC-CAGc -3' miRNA: 3'- uaGCG-GCCCACCaGGUcAGCGGaGUC- -5' |
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5748 | 5' | -60.9 | NC_001806.1 | + | 52537 | 0.67 | 0.603855 |
Target: 5'- cUCGCCGGacgacGUGGUCCGcGggGCCUCc- -3' miRNA: 3'- uAGCGGCC-----CACCAGGU-CagCGGAGuc -5' |
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5748 | 5' | -60.9 | NC_001806.1 | + | 89175 | 0.67 | 0.623736 |
Target: 5'- -gCGCUGGGuUGGcCCGGUCgGCUUCu- -3' miRNA: 3'- uaGCGGCCC-ACCaGGUCAG-CGGAGuc -5' |
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5748 | 5' | -60.9 | NC_001806.1 | + | 31387 | 0.67 | 0.643642 |
Target: 5'- -gCGCUGGGUGGUCUcuGGccgCGCC-CAc -3' miRNA: 3'- uaGCGGCCCACCAGG--UCa--GCGGaGUc -5' |
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5748 | 5' | -60.9 | NC_001806.1 | + | 73115 | 0.67 | 0.643642 |
Target: 5'- --gGCCGGGccG-CCGGUCGCCgaggCGGg -3' miRNA: 3'- uagCGGCCCacCaGGUCAGCGGa---GUC- -5' |
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5748 | 5' | -60.9 | NC_001806.1 | + | 96435 | 0.68 | 0.554611 |
Target: 5'- -aCGCUGGG-GGUCCuGGUgGCgUCGGc -3' miRNA: 3'- uaGCGGCCCaCCAGG-UCAgCGgAGUC- -5' |
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5748 | 5' | -60.9 | NC_001806.1 | + | 88952 | 0.7 | 0.469532 |
Target: 5'- -cCGCCGGGgcgUGGUCCAcGcCGCCccaCAGg -3' miRNA: 3'- uaGCGGCCC---ACCAGGU-CaGCGGa--GUC- -5' |
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5748 | 5' | -60.9 | NC_001806.1 | + | 16299 | 1.05 | 0.001738 |
Target: 5'- gAUCGCCGGGUGGUCCAGUCGCCUCAGc -3' miRNA: 3'- -UAGCGGCCCACCAGGUCAGCGGAGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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