miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5749 5' -53.4 NC_001806.1 + 50403 0.66 0.969621
Target:  5'- cUCGGuGGUCgugggGgcgcGCCugcACCCGCAc -3'
miRNA:   3'- -AGCC-CCAGaaaaaCa---CGGu--UGGGCGU- -5'
5749 5' -53.4 NC_001806.1 + 33079 0.66 0.966495
Target:  5'- cCGGGGggcCUUUUUcgcgucgcGUGCCGGCgaGCGg -3'
miRNA:   3'- aGCCCCa--GAAAAA--------CACGGUUGggCGU- -5'
5749 5' -53.4 NC_001806.1 + 6576 0.66 0.966495
Target:  5'- -gGGGGcUCacccgcgUUcGUGCCuuCCCGCAg -3'
miRNA:   3'- agCCCC-AGaa-----AAaCACGGuuGGGCGU- -5'
5749 5' -53.4 NC_001806.1 + 5003 0.66 0.966495
Target:  5'- gUCGGGGUCg---UGgucgggGUCGucCCCGCc -3'
miRNA:   3'- -AGCCCCAGaaaaACa-----CGGUu-GGGCGu -5'
5749 5' -53.4 NC_001806.1 + 13014 0.66 0.963149
Target:  5'- aUGGGGcCUUgggcccGUGCCAcCCgGCGa -3'
miRNA:   3'- aGCCCCaGAAaaa---CACGGUuGGgCGU- -5'
5749 5' -53.4 NC_001806.1 + 48774 0.66 0.963149
Target:  5'- cUGGGGUCUgg--GuUGCCGGCguguguguuagCCGCGu -3'
miRNA:   3'- aGCCCCAGAaaaaC-ACGGUUG-----------GGCGU- -5'
5749 5' -53.4 NC_001806.1 + 18966 0.66 0.963149
Target:  5'- -gGGGGUCccg----GgCGACCCGCAg -3'
miRNA:   3'- agCCCCAGaaaaacaCgGUUGGGCGU- -5'
5749 5' -53.4 NC_001806.1 + 103627 0.66 0.957323
Target:  5'- cUCGGGGUUUggucUUGgugGCCAcgggcacgcagaagaGCgCCGCGa -3'
miRNA:   3'- -AGCCCCAGAaa--AACa--CGGU---------------UG-GGCGU- -5'
5749 5' -53.4 NC_001806.1 + 101121 0.67 0.950475
Target:  5'- -gGGGGUCgucgaccacgGCCAgcACCCGCc -3'
miRNA:   3'- agCCCCAGaaaaaca---CGGU--UGGGCGu -5'
5749 5' -53.4 NC_001806.1 + 14415 0.67 0.947453
Target:  5'- -aGGGGUCcg-UUGUGUUGGCC-GCAg -3'
miRNA:   3'- agCCCCAGaaaAACACGGUUGGgCGU- -5'
5749 5' -53.4 NC_001806.1 + 106524 0.67 0.946568
Target:  5'- aCGGGGgagCUggugcucggGUGCgAugCCGCGc -3'
miRNA:   3'- aGCCCCa--GAaaaa-----CACGgUugGGCGU- -5'
5749 5' -53.4 NC_001806.1 + 76148 0.67 0.94293
Target:  5'- cUUGGGGggc----GUGCCGGCCCuGCGc -3'
miRNA:   3'- -AGCCCCagaaaaaCACGGUUGGG-CGU- -5'
5749 5' -53.4 NC_001806.1 + 3523 0.67 0.94293
Target:  5'- gUCGGGGUCguc----GCCc-CCCGCGg -3'
miRNA:   3'- -AGCCCCAGaaaaacaCGGuuGGGCGU- -5'
5749 5' -53.4 NC_001806.1 + 46090 0.67 0.933143
Target:  5'- cCGGGGcggUUUUGU-CCGGCCCGgGg -3'
miRNA:   3'- aGCCCCagaAAAACAcGGUUGGGCgU- -5'
5749 5' -53.4 NC_001806.1 + 76554 0.67 0.927876
Target:  5'- gCGGGG-CUgcgggagGUGCUGGCCgCGCGc -3'
miRNA:   3'- aGCCCCaGAaaaa---CACGGUUGG-GCGU- -5'
5749 5' -53.4 NC_001806.1 + 137694 0.68 0.92236
Target:  5'- aCGGGGcgCUgccg--GCCuuuACCCGCAg -3'
miRNA:   3'- aGCCCCa-GAaaaacaCGGu--UGGGCGU- -5'
5749 5' -53.4 NC_001806.1 + 44804 0.68 0.921795
Target:  5'- -gGGGGUCgccaggaUGUccaggaacgucacGUCGACCCGCAg -3'
miRNA:   3'- agCCCCAGaaaa---ACA-------------CGGUUGGGCGU- -5'
5749 5' -53.4 NC_001806.1 + 79843 0.68 0.916594
Target:  5'- uUUGGuGUCUgg-UGUGCCccuCCCGCu -3'
miRNA:   3'- -AGCCcCAGAaaaACACGGuu-GGGCGu -5'
5749 5' -53.4 NC_001806.1 + 147414 0.71 0.783896
Target:  5'- -aGGGGUUUUccUG-GcCCGACCCGCGc -3'
miRNA:   3'- agCCCCAGAAaaACaC-GGUUGGGCGU- -5'
5749 5' -53.4 NC_001806.1 + 92613 0.72 0.743228
Target:  5'- cCGGGGUCcaacca-GCCgAACCCGCAg -3'
miRNA:   3'- aGCCCCAGaaaaacaCGG-UUGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.