miRNA: 3'- -CACGUACCUUUU------------AGAa-----------CCUCCUgUGU- -5'
miRNA: 3'- caCGUACCU-------UUUAGa-------------ACCUCCugUGU- -5'
miRNA: 3'- caCGUACCUUUUaGAACCUCcUGUGu -5'
miRNA: 3'- -CACGUACCUUUUAGAACCUCCUGUGU- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 575 | 3' | -48 | AC_000015.1 | + | 31898 | 0.67 | 0.900842 |
|
Target: 5'- uGUGCGUGGGGAGagauugguguauUCUguuaaaugggaaGGGGGAgGCAa -3' miRNA: 3'- -CACGUACCUUUU------------AGAa-----------CCUCCUgUGU- -5' |
|||||||
| 575 | 3' | -48 | AC_000015.1 | + | 16763 | 0.67 | 0.880915 |
|
Target: 5'- -gGCAUGGGcauccauGGAUCcguuugcacuucagUGGAGGugGCAg -3' miRNA: 3'- caCGUACCU-------UUUAGa-------------ACCUCCugUGU- -5' |
|||||||
| 575 | 3' | -48 | AC_000015.1 | + | 4413 | 0.71 | 0.699364 |
|
Target: 5'- -aGCGUGGAAAAaUUUGGAG-ACACc -3' miRNA: 3'- caCGUACCUUUUaGAACCUCcUGUGu -5' |
|||||||
| 575 | 3' | -48 | AC_000015.1 | + | 4499 | 1.1 | 0.002338 |
|
Target: 5'- aGUGCAUGGAAAAUCUUGGAGGACACAa -3' miRNA: 3'- -CACGUACCUUUUAGAACCUCCUGUGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home