miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5750 3' -56.3 NC_001806.1 + 102520 0.66 0.858328
Target:  5'- cGCGGcCAGGCACGCcagGUAGCGgG-GCa- -3'
miRNA:   3'- -UGCC-GUCCGUGUG---CAUUGCgUgCGau -5'
5750 3' -56.3 NC_001806.1 + 2666 0.66 0.858328
Target:  5'- gGCGGCcgcGGGCGCcgcCGUGugGCugGg-- -3'
miRNA:   3'- -UGCCG---UCCGUGu--GCAUugCGugCgau -5'
5750 3' -56.3 NC_001806.1 + 3716 0.66 0.858328
Target:  5'- cGCGccaaCAGGgGCGCGUAggcgcgGCGCAgGCUGg -3'
miRNA:   3'- -UGCc---GUCCgUGUGCAU------UGCGUgCGAU- -5'
5750 3' -56.3 NC_001806.1 + 147626 0.66 0.857549
Target:  5'- gACGaGUgcgacugGGGCACACGgcGCGCGucCGCg- -3'
miRNA:   3'- -UGC-CG-------UCCGUGUGCauUGCGU--GCGau -5'
5750 3' -56.3 NC_001806.1 + 46433 0.66 0.850438
Target:  5'- cGCGGuCGGGCGCcugGCGgccAUGCAUGCc- -3'
miRNA:   3'- -UGCC-GUCCGUG---UGCau-UGCGUGCGau -5'
5750 3' -56.3 NC_001806.1 + 84249 0.66 0.850438
Target:  5'- cACGGcCGGGgGCGCG-GGCGCACcgGCg- -3'
miRNA:   3'- -UGCC-GUCCgUGUGCaUUGCGUG--CGau -5'
5750 3' -56.3 NC_001806.1 + 45283 0.67 0.842346
Target:  5'- aGCGGCGGGagACGCGggccCGCGCGg-- -3'
miRNA:   3'- -UGCCGUCCg-UGUGCauu-GCGUGCgau -5'
5750 3' -56.3 NC_001806.1 + 15719 0.67 0.83988
Target:  5'- uACGGCGGGCgauuguucccggccGCGCGggAGCGguaGCGCg- -3'
miRNA:   3'- -UGCCGUCCG--------------UGUGCa-UUGCg--UGCGau -5'
5750 3' -56.3 NC_001806.1 + 62310 0.67 0.837397
Target:  5'- gGCGGCGGGCcugGCGCGgaggGgguuugucggucacaGCGCGCaGCUc -3'
miRNA:   3'- -UGCCGUCCG---UGUGCa---U---------------UGCGUG-CGAu -5'
5750 3' -56.3 NC_001806.1 + 48202 0.67 0.834059
Target:  5'- gGCGGUcaugcGGGaaCACGCGUAcagccGCGCGCGUa- -3'
miRNA:   3'- -UGCCG-----UCC--GUGUGCAU-----UGCGUGCGau -5'
5750 3' -56.3 NC_001806.1 + 131944 0.67 0.834059
Target:  5'- gUGGCGGGCGC-UGUAcGCGUGCGUc- -3'
miRNA:   3'- uGCCGUCCGUGuGCAU-UGCGUGCGau -5'
5750 3' -56.3 NC_001806.1 + 75790 0.67 0.834059
Target:  5'- cGCcuGCAGGCGCugGcgggcACGCACgGCUAc -3'
miRNA:   3'- -UGc-CGUCCGUGugCau---UGCGUG-CGAU- -5'
5750 3' -56.3 NC_001806.1 + 131289 0.67 0.834059
Target:  5'- cGCGuGgGGGCGC-UGUuuGCGCACGCa- -3'
miRNA:   3'- -UGC-CgUCCGUGuGCAu-UGCGUGCGau -5'
5750 3' -56.3 NC_001806.1 + 10086 0.67 0.83322
Target:  5'- gACGGcCAGGCGagacgucCACGUAcucgcgGCGCACGg-- -3'
miRNA:   3'- -UGCC-GUCCGU-------GUGCAU------UGCGUGCgau -5'
5750 3' -56.3 NC_001806.1 + 3280 0.67 0.825584
Target:  5'- cGCGcGCAGGCgggGCGCGUcGGCGUGCGg-- -3'
miRNA:   3'- -UGC-CGUCCG---UGUGCA-UUGCGUGCgau -5'
5750 3' -56.3 NC_001806.1 + 134637 0.67 0.825584
Target:  5'- cACGGcCAGGCuguGCACGUGGuccuCGUugGCc- -3'
miRNA:   3'- -UGCC-GUCCG---UGUGCAUU----GCGugCGau -5'
5750 3' -56.3 NC_001806.1 + 125258 0.67 0.824726
Target:  5'- cACGGUAGGCccaGCAUGUccgccggGACGCAcCGUg- -3'
miRNA:   3'- -UGCCGUCCG---UGUGCA-------UUGCGU-GCGau -5'
5750 3' -56.3 NC_001806.1 + 95074 0.67 0.822143
Target:  5'- gGCGGCGGGCggagcauuucgaucGCGCGUucgggagccaccuGGCG-GCGCUGg -3'
miRNA:   3'- -UGCCGUCCG--------------UGUGCA-------------UUGCgUGCGAU- -5'
5750 3' -56.3 NC_001806.1 + 89284 0.67 0.816929
Target:  5'- cCGGCGGGCGCAaaaaacccgGACGC-CGCc- -3'
miRNA:   3'- uGCCGUCCGUGUgca------UUGCGuGCGau -5'
5750 3' -56.3 NC_001806.1 + 3605 0.67 0.816929
Target:  5'- cCGGCGGGCAC-CGc-GCGCuCGCc- -3'
miRNA:   3'- uGCCGUCCGUGuGCauUGCGuGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.