miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5750 5' -59.8 NC_001806.1 + 75786 0.66 0.771199
Target:  5'- cCGUCGCCUGCaGgcgCUGG-CgGGCaCGCa -3'
miRNA:   3'- -GCAGCGGGCG-Ca--GACCuGgUUG-GCGg -5'
5750 5' -59.8 NC_001806.1 + 62642 0.66 0.771199
Target:  5'- aCGggagCGCCUGCGcCacGGACC-ACUGCUu -3'
miRNA:   3'- -GCa---GCGGGCGCaGa-CCUGGuUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 56820 0.66 0.762124
Target:  5'- gGUCGCCCcCGggcccGCCAacACCGCCg -3'
miRNA:   3'- gCAGCGGGcGCagaccUGGU--UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 79381 0.66 0.762124
Target:  5'- ---aGCUCGCGUCUGacgacuCCGGCgGCCc -3'
miRNA:   3'- gcagCGGGCGCAGACcu----GGUUGgCGG- -5'
5750 5' -59.8 NC_001806.1 + 88346 0.66 0.762124
Target:  5'- aCGUCGCUgGaUGUCccgaaGGCCAucgggGCCGCCg -3'
miRNA:   3'- -GCAGCGGgC-GCAGac---CUGGU-----UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 106140 0.66 0.762124
Target:  5'- --cUGCCCGCccccaccacgGUCga-GCCGACCGCCc -3'
miRNA:   3'- gcaGCGGGCG----------CAGaccUGGUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 50290 0.67 0.753866
Target:  5'- -cUCGCCCGCuucaaucccgacgccGUCcGGugCGuuuugacgcgggagGCCGCCu -3'
miRNA:   3'- gcAGCGGGCG---------------CAGaCCugGU--------------UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 53901 0.67 0.752943
Target:  5'- gGUCGCCgGgGcgCUacagccGCCGACCGCCu -3'
miRNA:   3'- gCAGCGGgCgCa-GAcc----UGGUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 76952 0.67 0.752943
Target:  5'- gGUCGCuucggCCGCGUUcgcggggGGGCCuggaAAUCGCCc -3'
miRNA:   3'- gCAGCG-----GGCGCAGa------CCUGG----UUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 116342 0.67 0.752943
Target:  5'- uCGUCGCCUGCcccCUGGACgugGGCCucacccacGCCg -3'
miRNA:   3'- -GCAGCGGGCGca-GACCUGg--UUGG--------CGG- -5'
5750 5' -59.8 NC_001806.1 + 116441 0.67 0.752943
Target:  5'- uCGUccCGCCCGUGUUcgaGGGCCaagcgacggacGugCGCCu -3'
miRNA:   3'- -GCA--GCGGGCGCAGa--CCUGG-----------UugGCGG- -5'
5750 5' -59.8 NC_001806.1 + 20120 0.67 0.752943
Target:  5'- gCGUCGgUCGCG-CcGGGCCuuuauGugCGCCg -3'
miRNA:   3'- -GCAGCgGGCGCaGaCCUGG-----UugGCGG- -5'
5750 5' -59.8 NC_001806.1 + 101459 0.67 0.752943
Target:  5'- --cCGCCguUGCGUUcacGCCAACCGCCg -3'
miRNA:   3'- gcaGCGG--GCGCAGaccUGGUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 107035 0.67 0.752943
Target:  5'- gGcCGCCCGCG---GGGCCGcgggcuguGCCGCg -3'
miRNA:   3'- gCaGCGGGCGCagaCCUGGU--------UGGCGg -5'
5750 5' -59.8 NC_001806.1 + 134684 0.67 0.752943
Target:  5'- --cCGCgaagCCGCGauaaCUGGACUGGCCGCa -3'
miRNA:   3'- gcaGCG----GGCGCa---GACCUGGUUGGCGg -5'
5750 5' -59.8 NC_001806.1 + 106187 0.67 0.750169
Target:  5'- gGUCGCCCcccuuaaGgGUCUcuugcacaauCCAGCCGCCu -3'
miRNA:   3'- gCAGCGGG-------CgCAGAccu-------GGUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 62205 0.67 0.743663
Target:  5'- gGUcCGCCguCGCGcUCUGGuCCGuaaggGCCGUCa -3'
miRNA:   3'- gCA-GCGG--GCGC-AGACCuGGU-----UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 115900 0.67 0.743663
Target:  5'- -uUCGCUCucgguGCGUCUGGGCCcgacaGACCuCCc -3'
miRNA:   3'- gcAGCGGG-----CGCAGACCUGG-----UUGGcGG- -5'
5750 5' -59.8 NC_001806.1 + 26499 0.67 0.743663
Target:  5'- gCG-CGCCCGCGgcc-GcCCcGCCGCCg -3'
miRNA:   3'- -GCaGCGGGCGCagacCuGGuUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 2227 0.67 0.743663
Target:  5'- uGUCcgGCCCGCacagccggUUGG-CCAggGCCGCCa -3'
miRNA:   3'- gCAG--CGGGCGca------GACCuGGU--UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.