miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5751 3' -54.6 NC_001806.1 + 127954 0.66 0.923281
Target:  5'- aGGGCgacgcggacUCCCGucuGAGCCCCcg--GCCa -3'
miRNA:   3'- cUCCGa--------AGGGUu--UUCGGGGucuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 150792 0.66 0.91756
Target:  5'- -cGGCUuggugcggagcUCCCGGGAGCUCCgcggaAGAcccagGCCg -3'
miRNA:   3'- cuCCGA-----------AGGGUUUUCGGGG-----UCUa----CGG- -5'
5751 3' -54.6 NC_001806.1 + 149290 0.66 0.91756
Target:  5'- -cGGCUccUCCCcacccCCCUAGAUGCg -3'
miRNA:   3'- cuCCGA--AGGGuuuucGGGGUCUACGg -5'
5751 3' -54.6 NC_001806.1 + 2303 0.66 0.91756
Target:  5'- -cGGCccCCCcGAGGCCCC-GccGCCg -3'
miRNA:   3'- cuCCGaaGGGuUUUCGGGGuCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 10402 0.66 0.916975
Target:  5'- gGAGGCgggagCCgGGGGGUCCCgcuggcgGGAgUGCCg -3'
miRNA:   3'- -CUCCGaa---GGgUUUUCGGGG-------UCU-ACGG- -5'
5751 3' -54.6 NC_001806.1 + 77157 0.67 0.914008
Target:  5'- gGGGGCgcguggCCCAAcacgccgaccuGAGCgCCCGGcugcgggacgaggugGUGCCa -3'
miRNA:   3'- -CUCCGaa----GGGUU-----------UUCG-GGGUC---------------UACGG- -5'
5751 3' -54.6 NC_001806.1 + 144895 0.67 0.911591
Target:  5'- gGAGGCUuuuccggguUCCCGgcccGGGGCCUgAGAUGa- -3'
miRNA:   3'- -CUCCGA---------AGGGU----UUUCGGGgUCUACgg -5'
5751 3' -54.6 NC_001806.1 + 37548 0.67 0.911591
Target:  5'- aAGGUUUCCCAGGAGaCCCGucugGUCu -3'
miRNA:   3'- cUCCGAAGGGUUUUCgGGGUcua-CGG- -5'
5751 3' -54.6 NC_001806.1 + 9080 0.67 0.911591
Target:  5'- -cGGCc-CCCAggccgGAAGCCCCccGGA-GCCa -3'
miRNA:   3'- cuCCGaaGGGU-----UUUCGGGG--UCUaCGG- -5'
5751 3' -54.6 NC_001806.1 + 49668 0.67 0.910368
Target:  5'- -cGGCaUUCCCGuuggaucgacuGGCCCCucAGGuUGCCg -3'
miRNA:   3'- cuCCG-AAGGGUuu---------UCGGGG--UCU-ACGG- -5'
5751 3' -54.6 NC_001806.1 + 79852 0.67 0.898915
Target:  5'- -uGGUgugccccUCCCGcucGGGCCCCAGGccGCCg -3'
miRNA:   3'- cuCCGa------AGGGUu--UUCGGGGUCUa-CGG- -5'
5751 3' -54.6 NC_001806.1 + 132989 0.67 0.898915
Target:  5'- -uGGCcgcUCCCucAGAGCCCUGGGccgggGCCg -3'
miRNA:   3'- cuCCGa--AGGGu-UUUCGGGGUCUa----CGG- -5'
5751 3' -54.6 NC_001806.1 + 3678 0.67 0.898915
Target:  5'- cGGGGCUcCCCGc-GGCCCCcGucagcGCCg -3'
miRNA:   3'- -CUCCGAaGGGUuuUCGGGGuCua---CGG- -5'
5751 3' -54.6 NC_001806.1 + 62940 0.67 0.892213
Target:  5'- cGGGCgUCCgGAAAGCgcuCCCAGugaaagcgGCCg -3'
miRNA:   3'- cUCCGaAGGgUUUUCG---GGGUCua------CGG- -5'
5751 3' -54.6 NC_001806.1 + 109243 0.67 0.892213
Target:  5'- cGGGGCggaaUCCU--GGGCCCCGGGcaCCa -3'
miRNA:   3'- -CUCCGa---AGGGuuUUCGGGGUCUacGG- -5'
5751 3' -54.6 NC_001806.1 + 55731 0.67 0.892213
Target:  5'- -cGGCUgaCCCGGGGGaCCCCgauguGGggGCCu -3'
miRNA:   3'- cuCCGAa-GGGUUUUC-GGGG-----UCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 65635 0.67 0.892213
Target:  5'- uGGGCgag--AGGGGCCCCGGcgGCCu -3'
miRNA:   3'- cUCCGaagggUUUUCGGGGUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 2674 0.67 0.892213
Target:  5'- cGGGCgccgCCguGuggcuGGGCCCCGGGggcUGCCg -3'
miRNA:   3'- cUCCGaa--GGguU-----UUCGGGGUCU---ACGG- -5'
5751 3' -54.6 NC_001806.1 + 7390 0.67 0.890844
Target:  5'- -cGGUcUCCCAgGGAGCCCCGGucuccccgggaGCCc -3'
miRNA:   3'- cuCCGaAGGGU-UUUCGGGGUCua---------CGG- -5'
5751 3' -54.6 NC_001806.1 + 77953 0.67 0.878101
Target:  5'- gGGGGUgaCgCGGcGGCCCCGGG-GCCg -3'
miRNA:   3'- -CUCCGaaGgGUUuUCGGGGUCUaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.