miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5751 5' -52.9 NC_001806.1 + 63007 0.68 0.935751
Target:  5'- aGGGACGggcccCGCGaACGCACAGcGCGUUg -3'
miRNA:   3'- -CUCUGUa----GCGC-UGUGUGUCuUGCGGu -5'
5751 5' -52.9 NC_001806.1 + 147712 0.68 0.9306
Target:  5'- gGAGGCGgcgcUCGC-ACGCACGGGGCcacgGCCGc -3'
miRNA:   3'- -CUCUGU----AGCGcUGUGUGUCUUG----CGGU- -5'
5751 5' -52.9 NC_001806.1 + 84101 0.68 0.9306
Target:  5'- gGAGGCccGUCGCG-C-CACGGucCGCCAg -3'
miRNA:   3'- -CUCUG--UAGCGCuGuGUGUCuuGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 96626 0.68 0.9306
Target:  5'- -cGACAaCGCGACcgucgcCGCGGGccACGCCAc -3'
miRNA:   3'- cuCUGUaGCGCUGu-----GUGUCU--UGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 56976 0.68 0.9306
Target:  5'- uAGACGUCaucgGCGA-GCACcaGGAGCGCCGc -3'
miRNA:   3'- cUCUGUAG----CGCUgUGUG--UCUUGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 119506 0.68 0.9252
Target:  5'- cGuuGCAUCGgGGCuACGcCAGGGCGCCc -3'
miRNA:   3'- -CucUGUAGCgCUG-UGU-GUCUUGCGGu -5'
5751 5' -52.9 NC_001806.1 + 128221 0.68 0.9252
Target:  5'- aGGGAUAcCGCGGCgucggccguGCACAGGaagACGCCc -3'
miRNA:   3'- -CUCUGUaGCGCUG---------UGUGUCU---UGCGGu -5'
5751 5' -52.9 NC_001806.1 + 130480 0.68 0.919548
Target:  5'- cGAGGCGUCGCuGCcgGCcCAGGcCGCCGa -3'
miRNA:   3'- -CUCUGUAGCGcUG--UGuGUCUuGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 69987 0.68 0.919548
Target:  5'- uGGugGUCgGgGACGCGCuGAGgGCCAc -3'
miRNA:   3'- cUCugUAG-CgCUGUGUGuCUUgCGGU- -5'
5751 5' -52.9 NC_001806.1 + 1672 0.68 0.913647
Target:  5'- cAGAaGUC-CGGCGCGCcGGGCGCCAu -3'
miRNA:   3'- cUCUgUAGcGCUGUGUGuCUUGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 103931 0.68 0.913647
Target:  5'- cGGGuCA-CGCGGCugACGCGGAGCGuCCGu -3'
miRNA:   3'- -CUCuGUaGCGCUG--UGUGUCUUGC-GGU- -5'
5751 5' -52.9 NC_001806.1 + 54808 0.69 0.907497
Target:  5'- -uGGCAUUGCGuCGCG-AGAACGUCAc -3'
miRNA:   3'- cuCUGUAGCGCuGUGUgUCUUGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 136989 0.69 0.901099
Target:  5'- cGGuCAUgGCGGCggccgGCGgGGAGCGCCAg -3'
miRNA:   3'- cUCuGUAgCGCUG-----UGUgUCUUGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 3547 0.69 0.894458
Target:  5'- gGAGGCGggCGCGGCGgACAGc-CGCCc -3'
miRNA:   3'- -CUCUGUa-GCGCUGUgUGUCuuGCGGu -5'
5751 5' -52.9 NC_001806.1 + 2743 0.69 0.894458
Target:  5'- cGGGCcggCGCGACACggccACGGGGCGCgGg -3'
miRNA:   3'- cUCUGua-GCGCUGUG----UGUCUUGCGgU- -5'
5751 5' -52.9 NC_001806.1 + 47726 0.69 0.887577
Target:  5'- cGGACGcgaUCGCGAC-CugGGAgaaaugcugcGCGCCAc -3'
miRNA:   3'- cUCUGU---AGCGCUGuGugUCU----------UGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 113867 0.7 0.865533
Target:  5'- -cGcCAUCGCGACugccggguuaGCGCGGGGgGCCAc -3'
miRNA:   3'- cuCuGUAGCGCUG----------UGUGUCUUgCGGU- -5'
5751 5' -52.9 NC_001806.1 + 34314 0.7 0.865533
Target:  5'- gGGGGCggCGCGcCGgACGGGGCGCUg -3'
miRNA:   3'- -CUCUGuaGCGCuGUgUGUCUUGCGGu -5'
5751 5' -52.9 NC_001806.1 + 51136 0.7 0.849727
Target:  5'- gGAGGCG-CGCGACcggGCugGGAGgccCGCCAc -3'
miRNA:   3'- -CUCUGUaGCGCUG---UGugUCUU---GCGGU- -5'
5751 5' -52.9 NC_001806.1 + 118990 0.71 0.806726
Target:  5'- -cGugGUgUGUGACGCGCAGGGCGUCu -3'
miRNA:   3'- cuCugUA-GCGCUGUGUGUCUUGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.