miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5753 5' -54.7 NC_001806.1 + 143457 0.66 0.935615
Target:  5'- ----gGGCcgUGUCCuugCUUUCCCCCCg -3'
miRNA:   3'- aauagCUG--ACAGGug-GAAAGGGGGGa -5'
5753 5' -54.7 NC_001806.1 + 151778 0.66 0.930481
Target:  5'- --uUCGGCgucuggCCGCUccUCCCCCCg -3'
miRNA:   3'- aauAGCUGaca---GGUGGaaAGGGGGGa -5'
5753 5' -54.7 NC_001806.1 + 68 0.66 0.930481
Target:  5'- --uUCGGCgucuggCCGCUccUCCCCCCg -3'
miRNA:   3'- aauAGCUGaca---GGUGGaaAGGGGGGa -5'
5753 5' -54.7 NC_001806.1 + 85284 0.66 0.925099
Target:  5'- gUGUUGGCcGaCCGCCacaacgCCCCCCUc -3'
miRNA:   3'- aAUAGCUGaCaGGUGGaaa---GGGGGGA- -5'
5753 5' -54.7 NC_001806.1 + 45922 0.67 0.894482
Target:  5'- ---cCGAUaGUCCGCCUgacaCCUCCCg -3'
miRNA:   3'- aauaGCUGaCAGGUGGAaa--GGGGGGa -5'
5753 5' -54.7 NC_001806.1 + 69837 0.67 0.880547
Target:  5'- ---aCGccGCUGUCCGCgCUUcUCCCCUCg -3'
miRNA:   3'- aauaGC--UGACAGGUG-GAA-AGGGGGGa -5'
5753 5' -54.7 NC_001806.1 + 20929 0.67 0.880547
Target:  5'- -gAUCGGCcGUCCcuguCCUUuuUCCCaCCCa -3'
miRNA:   3'- aaUAGCUGaCAGGu---GGAA--AGGG-GGGa -5'
5753 5' -54.7 NC_001806.1 + 100926 0.68 0.873232
Target:  5'- -gAUCGGg-GUgCGCCUcgCCCCCCa -3'
miRNA:   3'- aaUAGCUgaCAgGUGGAaaGGGGGGa -5'
5753 5' -54.7 NC_001806.1 + 148931 0.68 0.873232
Target:  5'- -gGUCGGC-GUCCcCCcg-CCCCCCc -3'
miRNA:   3'- aaUAGCUGaCAGGuGGaaaGGGGGGa -5'
5753 5' -54.7 NC_001806.1 + 52376 0.68 0.857936
Target:  5'- cUGUCGGa---CCACCg--CCCCCCUg -3'
miRNA:   3'- aAUAGCUgacaGGUGGaaaGGGGGGA- -5'
5753 5' -54.7 NC_001806.1 + 5835 0.69 0.798105
Target:  5'- -cGUUGGCcGUCC-CCgggCCCCCCg -3'
miRNA:   3'- aaUAGCUGaCAGGuGGaaaGGGGGGa -5'
5753 5' -54.7 NC_001806.1 + 13103 0.71 0.700251
Target:  5'- ---cCGauGCUGUCCACCgucaCCCCCUg -3'
miRNA:   3'- aauaGC--UGACAGGUGGaaagGGGGGA- -5'
5753 5' -54.7 NC_001806.1 + 114568 0.72 0.658896
Target:  5'- gUcgCGGCagGUCCcCCUggUCCCCCCg -3'
miRNA:   3'- aAuaGCUGa-CAGGuGGAa-AGGGGGGa -5'
5753 5' -54.7 NC_001806.1 + 53222 0.72 0.657855
Target:  5'- cUGUaCGACUGggggggaUCCGCCcuauUUUCCCCCCc -3'
miRNA:   3'- aAUA-GCUGAC-------AGGUGG----AAAGGGGGGa -5'
5753 5' -54.7 NC_001806.1 + 22695 0.74 0.534775
Target:  5'- ---gCGGCUGUCCGCCgcgCCCgCCUc -3'
miRNA:   3'- aauaGCUGACAGGUGGaaaGGGgGGA- -5'
5753 5' -54.7 NC_001806.1 + 12539 1.05 0.006495
Target:  5'- cUUAUCGACUGUCCACCUUUCCCCCCUu -3'
miRNA:   3'- -AAUAGCUGACAGGUGGAAAGGGGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.