miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5754 3' -57.2 NC_001806.1 + 29078 0.67 0.796323
Target:  5'- gCACGGACAcggaacuguucgagACgGGGCUGcuggGGcCGCAGg -3'
miRNA:   3'- -GUGCCUGU--------------UGgUCCGACca--CC-GUGUC- -5'
5754 3' -57.2 NC_001806.1 + 111542 0.67 0.780808
Target:  5'- aCACGGGUGGCCGGGCguuggGGUGGaucuUAGc -3'
miRNA:   3'- -GUGCCUGUUGGUCCGa----CCACCgu--GUC- -5'
5754 3' -57.2 NC_001806.1 + 62242 0.67 0.780808
Target:  5'- aGCGGGgGAgaGGGCUGG-GGcCGCGGa -3'
miRNA:   3'- gUGCCUgUUggUCCGACCaCC-GUGUC- -5'
5754 3' -57.2 NC_001806.1 + 25634 0.68 0.771498
Target:  5'- gCugGGGCuggggaGGGCUGG-GGCugGGg -3'
miRNA:   3'- -GugCCUGuugg--UCCGACCaCCGugUC- -5'
5754 3' -57.2 NC_001806.1 + 81342 0.68 0.771498
Target:  5'- aCGCGGgccGCAACCAGGCggccGG-GGCGu-- -3'
miRNA:   3'- -GUGCC---UGUUGGUCCGa---CCaCCGUguc -5'
5754 3' -57.2 NC_001806.1 + 121342 0.68 0.771498
Target:  5'- uCGCGGAgGAgCCAGuggucggcgaGCUGGaUGGCGCGu -3'
miRNA:   3'- -GUGCCUgUU-GGUC----------CGACC-ACCGUGUc -5'
5754 3' -57.2 NC_001806.1 + 38809 0.68 0.771498
Target:  5'- cCGCGGGgAcCCGGGCgggGGUGGaUACGc -3'
miRNA:   3'- -GUGCCUgUuGGUCCGa--CCACC-GUGUc -5'
5754 3' -57.2 NC_001806.1 + 68256 0.68 0.762065
Target:  5'- gGCGGACGACCcGGCguuucUGGcCACGGc -3'
miRNA:   3'- gUGCCUGUUGGuCCGacc--ACC-GUGUC- -5'
5754 3' -57.2 NC_001806.1 + 3138 0.68 0.759212
Target:  5'- gCGCGGggcccagggccccgGCGACCAGGCUcacGGcGcGCACGGc -3'
miRNA:   3'- -GUGCC--------------UGUUGGUCCGA---CCaC-CGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 86215 0.68 0.733113
Target:  5'- --aGGugGGCCAGGCgcuuguUGGUGuacgcGCGCGGg -3'
miRNA:   3'- gugCCugUUGGUCCG------ACCAC-----CGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 14554 0.68 0.723275
Target:  5'- -cCGGAUAGCCAGGCc--UGGCuCAGa -3'
miRNA:   3'- guGCCUGUUGGUCCGaccACCGuGUC- -5'
5754 3' -57.2 NC_001806.1 + 73442 0.68 0.723275
Target:  5'- -cCGGACGcacacCCAGGCcggGGUGGC-CGGc -3'
miRNA:   3'- guGCCUGUu----GGUCCGa--CCACCGuGUC- -5'
5754 3' -57.2 NC_001806.1 + 83265 0.69 0.713359
Target:  5'- gGCGGGCGACggaggGGGUUcGGgcgGGCGCGGa -3'
miRNA:   3'- gUGCCUGUUGg----UCCGA-CCa--CCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 21195 0.69 0.713359
Target:  5'- aGCGGGgGGCCcucGGgUGG-GGCGCGGa -3'
miRNA:   3'- gUGCCUgUUGGu--CCgACCaCCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 34421 0.69 0.703375
Target:  5'- -cCGGGCcgGGCCGGGCcgGGUGG-GCGGg -3'
miRNA:   3'- guGCCUG--UUGGUCCGa-CCACCgUGUC- -5'
5754 3' -57.2 NC_001806.1 + 99658 0.69 0.703375
Target:  5'- gGCGGGCAGgCA-GCUGG-GGCAUAc -3'
miRNA:   3'- gUGCCUGUUgGUcCGACCaCCGUGUc -5'
5754 3' -57.2 NC_001806.1 + 100300 0.69 0.69333
Target:  5'- aCGCGGaauGCGGCUgGGGUUGG-GGCGCGGc -3'
miRNA:   3'- -GUGCC---UGUUGG-UCCGACCaCCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 100471 0.69 0.69333
Target:  5'- gACGGACGAUUGGGCaccGGUcacccugcGGCGCGGc -3'
miRNA:   3'- gUGCCUGUUGGUCCGa--CCA--------CCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 24527 0.69 0.683234
Target:  5'- gCGCuGGACGGCCGGGC-GGcGGCcuCGGg -3'
miRNA:   3'- -GUG-CCUGUUGGUCCGaCCaCCGu-GUC- -5'
5754 3' -57.2 NC_001806.1 + 57011 0.69 0.662925
Target:  5'- gGCGGcGCccaguGCCAGGCacugGGUGGC-CGGg -3'
miRNA:   3'- gUGCC-UGu----UGGUCCGa---CCACCGuGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.