miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5754 5' -59.6 NC_001806.1 + 75423 0.66 0.744981
Target:  5'- cGUCCAgGuGCGCCGGGCCgc-CAACc -3'
miRNA:   3'- -CGGGUgCuCGUGGUCCGGgacGUUGc -5'
5754 5' -59.6 NC_001806.1 + 137690 0.66 0.744981
Target:  5'- aCCCACgGGGCGCUgccGGCCUUuacccGCAGCa -3'
miRNA:   3'- cGGGUG-CUCGUGGu--CCGGGA-----CGUUGc -5'
5754 5' -59.6 NC_001806.1 + 39968 0.66 0.744032
Target:  5'- aCCaCACGAGCACgAGGCCgUacgccguuaucaaGaCGACGg -3'
miRNA:   3'- cGG-GUGCUCGUGgUCCGGgA-------------C-GUUGC- -5'
5754 5' -59.6 NC_001806.1 + 115616 0.66 0.741179
Target:  5'- cGCUCACcuGCGCCAGcgaccccGCCCUccuccgcagugcccGCAACGg -3'
miRNA:   3'- -CGGGUGcuCGUGGUC-------CGGGA--------------CGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 82749 0.66 0.735448
Target:  5'- cGUCguCGGGCGCUuuuauAGGCCCgGCGuACGu -3'
miRNA:   3'- -CGGguGCUCGUGG-----UCCGGGaCGU-UGC- -5'
5754 5' -59.6 NC_001806.1 + 67550 0.66 0.735448
Target:  5'- gGCgCAgGAcGCGCCgaagcAGGCCCUGUcccGCGg -3'
miRNA:   3'- -CGgGUgCU-CGUGG-----UCCGGGACGu--UGC- -5'
5754 5' -59.6 NC_001806.1 + 70243 0.66 0.735448
Target:  5'- uGCCguCGAGCAgCugcGGCCCcugguccagcUGCAGCc -3'
miRNA:   3'- -CGGguGCUCGUgGu--CCGGG----------ACGUUGc -5'
5754 5' -59.6 NC_001806.1 + 23031 0.66 0.735448
Target:  5'- cGCCUGCGcggggaccuGCGCguGGCCggcgGCAGCGa -3'
miRNA:   3'- -CGGGUGCu--------CGUGguCCGGga--CGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 88973 0.66 0.73449
Target:  5'- cGCCCcacaggcGCGAGCGCCGcGGCCagaaGCcGCc -3'
miRNA:   3'- -CGGG-------UGCUCGUGGU-CCGGga--CGuUGc -5'
5754 5' -59.6 NC_001806.1 + 20391 0.66 0.725829
Target:  5'- cGUCCgGCGGGCgggACCgggGGGCCCgGgGACGg -3'
miRNA:   3'- -CGGG-UGCUCG---UGG---UCCGGGaCgUUGC- -5'
5754 5' -59.6 NC_001806.1 + 29527 0.66 0.725829
Target:  5'- aCCCugGgggGGCACacggugaGGGCCCUGUcGCc -3'
miRNA:   3'- cGGGugC---UCGUGg------UCCGGGACGuUGc -5'
5754 5' -59.6 NC_001806.1 + 36206 0.66 0.725829
Target:  5'- uGCCgCGCGGGCgGCCAuGCCgCUGgAGCu -3'
miRNA:   3'- -CGG-GUGCUCG-UGGUcCGG-GACgUUGc -5'
5754 5' -59.6 NC_001806.1 + 67510 0.66 0.725829
Target:  5'- cCCCugGGGaGCCcuGGGCCgUcGCGGCGa -3'
miRNA:   3'- cGGGugCUCgUGG--UCCGGgA-CGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 140118 0.66 0.725829
Target:  5'- cGCCCccagAgGAGaCGCCAGGCgCgGCAcACGg -3'
miRNA:   3'- -CGGG----UgCUC-GUGGUCCGgGaCGU-UGC- -5'
5754 5' -59.6 NC_001806.1 + 4453 0.66 0.725829
Target:  5'- cGCCCGgGGGCuGCCGGcGCCgCgcuCGACGg -3'
miRNA:   3'- -CGGGUgCUCG-UGGUC-CGG-Gac-GUUGC- -5'
5754 5' -59.6 NC_001806.1 + 52054 0.66 0.725829
Target:  5'- cGCCCGCGGaaacguucgcGCGCCaucuggaccgGGGuCCCaGCGGCa -3'
miRNA:   3'- -CGGGUGCU----------CGUGG----------UCC-GGGaCGUUGc -5'
5754 5' -59.6 NC_001806.1 + 1609 0.66 0.723895
Target:  5'- gGCCgcaGCGGcGCGcCCAGGCCCcagcgcgcgcagGCGGCGu -3'
miRNA:   3'- -CGGg--UGCU-CGU-GGUCCGGGa-----------CGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 119629 0.67 0.716132
Target:  5'- gGCCC-C-AGCGCCccacGGGCCCggggGCGAgGa -3'
miRNA:   3'- -CGGGuGcUCGUGG----UCCGGGa---CGUUgC- -5'
5754 5' -59.6 NC_001806.1 + 19637 0.67 0.716132
Target:  5'- cGCCCgACGAGCAggaagcGGUCCacGCAACGg -3'
miRNA:   3'- -CGGG-UGCUCGUggu---CCGGGa-CGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 18877 0.67 0.716132
Target:  5'- gGCaCCACGuGCGCgGGGCCa---GACGg -3'
miRNA:   3'- -CG-GGUGCuCGUGgUCCGGgacgUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.