miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5755 3' -61.6 NC_001806.1 + 89781 0.66 0.68025
Target:  5'- gGGcGUGGGaGGGgCUGGggcggaccggcacgCCCCCAgGAa -3'
miRNA:   3'- -CCaCACCC-CCUgGACCa-------------GGGGGUgUU- -5'
5755 3' -61.6 NC_001806.1 + 122029 0.66 0.67632
Target:  5'- gGGUGUGGGucgggucGACCcGGggCCCCUugGGa -3'
miRNA:   3'- -CCACACCCc------CUGGaCCa-GGGGGugUU- -5'
5755 3' -61.6 NC_001806.1 + 111335 0.66 0.675337
Target:  5'- gGGUGgggcgGGGGGggggguauauaagGCCUGGgaUCCCACGu -3'
miRNA:   3'- -CCACa----CCCCC-------------UGGACCagGGGGUGUu -5'
5755 3' -61.6 NC_001806.1 + 79282 0.66 0.655611
Target:  5'- --cGUuGGGGcccggaaGCCUGG-CCCCCACGc -3'
miRNA:   3'- ccaCAcCCCC-------UGGACCaGGGGGUGUu -5'
5755 3' -61.6 NC_001806.1 + 26251 0.67 0.616998
Target:  5'- cGGUGgcGGcGGGcaGCCcgGGcCCCCCGCGg -3'
miRNA:   3'- -CCACa-CC-CCC--UGGa-CCaGGGGGUGUu -5'
5755 3' -61.6 NC_001806.1 + 8059 0.67 0.597232
Target:  5'- gGGUGU-GGGGACCcGGcccuaaCCCCACc- -3'
miRNA:   3'- -CCACAcCCCCUGGaCCag----GGGGUGuu -5'
5755 3' -61.6 NC_001806.1 + 99830 0.67 0.597232
Target:  5'- cGGcGUGuacauuccauaGGGGGCgCUGGUCCgagCCCGCAu -3'
miRNA:   3'- -CCaCAC-----------CCCCUG-GACCAGG---GGGUGUu -5'
5755 3' -61.6 NC_001806.1 + 137199 0.67 0.597232
Target:  5'- --aGUGGuuccGGGACgUGGcggccuuagagUCCCCCGCAGg -3'
miRNA:   3'- ccaCACC----CCCUGgACC-----------AGGGGGUGUU- -5'
5755 3' -61.6 NC_001806.1 + 10047 0.67 0.587383
Target:  5'- cGGUG-GGGGGuuuguUCUGGaacaCCCCGCGu -3'
miRNA:   3'- -CCACaCCCCCu----GGACCag--GGGGUGUu -5'
5755 3' -61.6 NC_001806.1 + 50408 0.67 0.587383
Target:  5'- uGGUcGUGGGGGcgcGCCUGcaCCCgCACGu -3'
miRNA:   3'- -CCA-CACCCCC---UGGACcaGGGgGUGUu -5'
5755 3' -61.6 NC_001806.1 + 68952 0.68 0.529127
Target:  5'- ----cGGGGGGCUgUGGUCCCgCCGCc- -3'
miRNA:   3'- ccacaCCCCCUGG-ACCAGGG-GGUGuu -5'
5755 3' -61.6 NC_001806.1 + 118900 0.68 0.500784
Target:  5'- --gGUGGGGGAgcuUCUGG-CCCCCGuCGu -3'
miRNA:   3'- ccaCACCCCCU---GGACCaGGGGGU-GUu -5'
5755 3' -61.6 NC_001806.1 + 105751 0.69 0.473131
Target:  5'- --cGUGGguuaGGGACggGGUCCCCCAUGGg -3'
miRNA:   3'- ccaCACC----CCCUGgaCCAGGGGGUGUU- -5'
5755 3' -61.6 NC_001806.1 + 132703 0.69 0.472222
Target:  5'- --gGUGGGGG-CCagGGUcguccucCCCCCGCGAg -3'
miRNA:   3'- ccaCACCCCCuGGa-CCA-------GGGGGUGUU- -5'
5755 3' -61.6 NC_001806.1 + 126679 0.71 0.379062
Target:  5'- cGUGUccuggagcuccGGGGAUCUGGUCCgCCGCGAg -3'
miRNA:   3'- cCACAc----------CCCCUGGACCAGGgGGUGUU- -5'
5755 3' -61.6 NC_001806.1 + 77274 0.72 0.340648
Target:  5'- cGGUGgccGGGGACCUGG-CCCCauggGCGGu -3'
miRNA:   3'- -CCACac-CCCCUGGACCaGGGGg---UGUU- -5'
5755 3' -61.6 NC_001806.1 + 28607 0.72 0.326091
Target:  5'- cGUGUuGGGGGCgUGGUCCCCaCugAc -3'
miRNA:   3'- cCACAcCCCCUGgACCAGGGG-GugUu -5'
5755 3' -61.6 NC_001806.1 + 73526 0.72 0.326091
Target:  5'- --cGUGGGGGACuuuCUGG-CCUCCACGc -3'
miRNA:   3'- ccaCACCCCCUG---GACCaGGGGGUGUu -5'
5755 3' -61.6 NC_001806.1 + 24891 0.72 0.318988
Target:  5'- aGGUGcUGGGGGcggaggcggGCUUGGccacgCCCCCGCGg -3'
miRNA:   3'- -CCAC-ACCCCC---------UGGACCa----GGGGGUGUu -5'
5755 3' -61.6 NC_001806.1 + 54859 0.76 0.191396
Target:  5'- aGGUGaagguccgcgGGGGGACCUGG-CCgCCGCAGc -3'
miRNA:   3'- -CCACa---------CCCCCUGGACCaGGgGGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.