Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5755 | 5' | -51.2 | NC_001806.1 | + | 70290 | 0.68 | 0.979713 |
Target: 5'- cCCCCGAG-GUGGGCAccag--CCUCCu -3' miRNA: 3'- -GGGGCUCuUAUUCGUccagaaGGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 71670 | 0.68 | 0.977125 |
Target: 5'- aCCCCGGGggUccgguccauaaacAGGcCGGGUCU-CUggCCa -3' miRNA: 3'- -GGGGCUCuuA-------------UUC-GUCCAGAaGGa-GG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 106710 | 0.68 | 0.972094 |
Target: 5'- cCCCCGGGcggcccccGGUAu-CGGGUCUUUgUCCu -3' miRNA: 3'- -GGGGCUC--------UUAUucGUCCAGAAGgAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 74361 | 0.69 | 0.965985 |
Target: 5'- cCCCCGAGGAccuGGC-GGcCUggcUCUCCg -3' miRNA: 3'- -GGGGCUCUUau-UCGuCCaGAa--GGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 9383 | 0.69 | 0.965985 |
Target: 5'- gCCUGGGAGUAacGGCgaucGGGcCUUCCggaUCCa -3' miRNA: 3'- gGGGCUCUUAU--UCG----UCCaGAAGG---AGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 20722 | 0.69 | 0.962601 |
Target: 5'- cCCgCCGGGG--GGGCGGGgggccggCggCCUCCg -3' miRNA: 3'- -GG-GGCUCUuaUUCGUCCa------GaaGGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 148786 | 0.69 | 0.962601 |
Target: 5'- cCCCCGcaacu--GCcgGGGUCUUCCUCg -3' miRNA: 3'- -GGGGCucuuauuCG--UCCAGAAGGAGg -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 92474 | 0.69 | 0.961184 |
Target: 5'- gUCCGAGGccgccaaggcGCGGGUCgccagCCUCCa -3' miRNA: 3'- gGGGCUCUuauu------CGUCCAGaa---GGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 72543 | 0.69 | 0.951066 |
Target: 5'- cCCCCGGGAggGGGUAGGgggcCCggggCCa -3' miRNA: 3'- -GGGGCUCUuaUUCGUCCagaaGGa---GG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 37092 | 0.69 | 0.951066 |
Target: 5'- gCCCCGGGGA--GGUAGaaaugcaUCUUCuCUCCg -3' miRNA: 3'- -GGGGCUCUUauUCGUCc------AGAAG-GAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 26709 | 0.7 | 0.942178 |
Target: 5'- gCCCGGGG---GGCGGGgCUgaccCCUCCc -3' miRNA: 3'- gGGGCUCUuauUCGUCCaGAa---GGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 95582 | 0.7 | 0.942178 |
Target: 5'- gCUCGAGAAgaugcuGCGGGUCagCgUCCa -3' miRNA: 3'- gGGGCUCUUauu---CGUCCAGaaGgAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 3956 | 0.7 | 0.929147 |
Target: 5'- uCCCCGGGGAccacgcGCGGGuUCUggagccaccccaggCCUCCg -3' miRNA: 3'- -GGGGCUCUUauu---CGUCC-AGAa-------------GGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 132697 | 0.7 | 0.926992 |
Target: 5'- gCCCGcGGuggGGGCcaGGGUCgUCCUCCc -3' miRNA: 3'- gGGGCuCUua-UUCG--UCCAGaAGGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 27845 | 0.71 | 0.921431 |
Target: 5'- uCCCCGGGGAcgGGGCcgccccgcgguGGGcCUgCCUCCc -3' miRNA: 3'- -GGGGCUCUUa-UUCG-----------UCCaGAaGGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 27130 | 0.71 | 0.920861 |
Target: 5'- aCCCGAGGc--GGCcuGGGUCUUCCgcggagcUCCc -3' miRNA: 3'- gGGGCUCUuauUCG--UCCAGAAGG-------AGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 150710 | 0.71 | 0.920861 |
Target: 5'- cCCCCGAGGcgGcccgcccugugagGGCGGG-CUggCUCCa -3' miRNA: 3'- -GGGGCUCUuaU-------------UCGUCCaGAagGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 16936 | 0.71 | 0.91562 |
Target: 5'- aCCCGGGAcgGcuuugucuccGGCGGGacggcuccucCUUCCUCCu -3' miRNA: 3'- gGGGCUCUuaU----------UCGUCCa---------GAAGGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 146928 | 0.71 | 0.90956 |
Target: 5'- uCCCCGucuccauguccAGGAUGGGCAGGcagUCCcCCg -3' miRNA: 3'- -GGGGC-----------UCUUAUUCGUCCagaAGGaGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 147012 | 0.71 | 0.900663 |
Target: 5'- cCCCCGAG-AUGGGCAGGUagcgcgugaggCCgCCc -3' miRNA: 3'- -GGGGCUCuUAUUCGUCCAgaa--------GGaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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