miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5756 3' -52.4 NC_001806.1 + 109562 0.67 0.975049
Target:  5'- gCCAGGGCGAACAcGuaUGGgGacgGGg -3'
miRNA:   3'- gGGUCCUGUUUGU-CcgACCgCaaaCC- -5'
5756 3' -52.4 NC_001806.1 + 9122 0.67 0.975049
Target:  5'- gCCAGGcgACAAACAGGgagggGGCGUcgacagccUGGa -3'
miRNA:   3'- gGGUCC--UGUUUGUCCga---CCGCAa-------ACC- -5'
5756 3' -52.4 NC_001806.1 + 93600 0.67 0.975049
Target:  5'- cCCCGGGACcGGCAuuugccGGCcgcaaacgGGCGUUccacgGGg -3'
miRNA:   3'- -GGGUCCUGuUUGU------CCGa-------CCGCAAa----CC- -5'
5756 3' -52.4 NC_001806.1 + 100201 0.67 0.975049
Target:  5'- cCCCGGGAUAcuGAUGGGCga-CGUggGGa -3'
miRNA:   3'- -GGGUCCUGU--UUGUCCGaccGCAaaCC- -5'
5756 3' -52.4 NC_001806.1 + 107899 0.67 0.975049
Target:  5'- aCCCGGGAuaucgagucCAAGC-GGCUGGUGc---- -3'
miRNA:   3'- -GGGUCCU---------GUUUGuCCGACCGCaaacc -5'
5756 3' -52.4 NC_001806.1 + 55527 0.67 0.972341
Target:  5'- gCCCGGGGgguuUAGugGGGCggcccgacuUGGCGggggUGGu -3'
miRNA:   3'- -GGGUCCU----GUUugUCCG---------ACCGCaa--ACC- -5'
5756 3' -52.4 NC_001806.1 + 49156 0.67 0.969428
Target:  5'- gCCCGuggcGGACGAgccaGCGGGCgaUGGgGUggGGu -3'
miRNA:   3'- -GGGU----CCUGUU----UGUCCG--ACCgCAaaCC- -5'
5756 3' -52.4 NC_001806.1 + 65277 0.67 0.969428
Target:  5'- aCCCAgGGugAAGCGGGgaGGaGgagGGg -3'
miRNA:   3'- -GGGU-CCugUUUGUCCgaCCgCaaaCC- -5'
5756 3' -52.4 NC_001806.1 + 104904 0.67 0.969428
Target:  5'- cCCCAGGcCGu----GCUGGCGUUcgUGGc -3'
miRNA:   3'- -GGGUCCuGUuugucCGACCGCAA--ACC- -5'
5756 3' -52.4 NC_001806.1 + 117856 0.67 0.966303
Target:  5'- aCUguGGACGAcgcaGCGGGCgaugucGGCGg--GGg -3'
miRNA:   3'- -GGguCCUGUU----UGUCCGa-----CCGCaaaCC- -5'
5756 3' -52.4 NC_001806.1 + 83254 0.67 0.966303
Target:  5'- gCCCGcGGGgGGGCGGGCgacggagGGgGUUcGGg -3'
miRNA:   3'- -GGGU-CCUgUUUGUCCGa------CCgCAAaCC- -5'
5756 3' -52.4 NC_001806.1 + 105101 0.67 0.962959
Target:  5'- -gCAGGGC-GGCGGGUcgUGGCGggaggaUUGGg -3'
miRNA:   3'- ggGUCCUGuUUGUCCG--ACCGCa-----AACC- -5'
5756 3' -52.4 NC_001806.1 + 5875 0.67 0.962959
Target:  5'- gCCGGGACcAACGGGaCggcgGGCGgcccaaGGg -3'
miRNA:   3'- gGGUCCUGuUUGUCC-Ga---CCGCaaa---CC- -5'
5756 3' -52.4 NC_001806.1 + 99934 0.67 0.962959
Target:  5'- uCCCGGGAgAAugGCGGGCcGcGCGccgGGa -3'
miRNA:   3'- -GGGUCCUgUU--UGUCCGaC-CGCaaaCC- -5'
5756 3' -52.4 NC_001806.1 + 135400 0.68 0.954006
Target:  5'- uCCCAGaGGCGcGACAGGCgcuccagguccugGGCGUacgaagGGa -3'
miRNA:   3'- -GGGUC-CUGU-UUGUCCGa------------CCGCAaa----CC- -5'
5756 3' -52.4 NC_001806.1 + 147788 0.68 0.947287
Target:  5'- gCCCGGGGCGgggGGCGGaGCcUGGCa--UGGg -3'
miRNA:   3'- -GGGUCCUGU---UUGUC-CG-ACCGcaaACC- -5'
5756 3' -52.4 NC_001806.1 + 42650 0.68 0.947287
Target:  5'- gUCCGGuGCGG--GGGCUGGCGUUguugaUGGc -3'
miRNA:   3'- -GGGUCcUGUUugUCCGACCGCAA-----ACC- -5'
5756 3' -52.4 NC_001806.1 + 13136 0.68 0.942775
Target:  5'- gCCUgggGGGAgAGGCAGGCUGaCGgg-GGg -3'
miRNA:   3'- -GGG---UCCUgUUUGUCCGACcGCaaaCC- -5'
5756 3' -52.4 NC_001806.1 + 41718 0.69 0.938018
Target:  5'- cCCCGGGACuGGCGGGCgcaaacgcgGGCcacccgcgGGg -3'
miRNA:   3'- -GGGUCCUGuUUGUCCGa--------CCGcaaa----CC- -5'
5756 3' -52.4 NC_001806.1 + 81949 0.69 0.938018
Target:  5'- uCCCGGGACcgcCGGGUUcGGCGgcgacgGGu -3'
miRNA:   3'- -GGGUCCUGuuuGUCCGA-CCGCaaa---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.