miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5756 5' -51.9 NC_001806.1 + 50821 0.66 0.986924
Target:  5'- nCCC-UGCGCu--ACGCGUGCGuCCuCCg -3'
miRNA:   3'- uGGGuAUGCGcauUGUGCAUGU-GG-GG- -5'
5756 5' -51.9 NC_001806.1 + 120017 0.66 0.986924
Target:  5'- uGCCCcUGCGC----CACccGCGCCCCg -3'
miRNA:   3'- -UGGGuAUGCGcauuGUGcaUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 26773 0.66 0.985932
Target:  5'- cGCCCuccgccUGCGCGUcaccgcggagcaccuGGCGCGccUGCGCCUg -3'
miRNA:   3'- -UGGGu-----AUGCGCA---------------UUGUGC--AUGUGGGg -5'
5756 5' -51.9 NC_001806.1 + 70009 0.66 0.985239
Target:  5'- gGCC---ACGUGUAGCGCGgccUACcuuCCCCg -3'
miRNA:   3'- -UGGguaUGCGCAUUGUGC---AUGu--GGGG- -5'
5756 5' -51.9 NC_001806.1 + 320 0.66 0.985239
Target:  5'- cGCCCGccGCGCGcgcGCACGc-CGCCCg -3'
miRNA:   3'- -UGGGUa-UGCGCau-UGUGCauGUGGGg -5'
5756 5' -51.9 NC_001806.1 + 137814 0.66 0.985239
Target:  5'- cACCCcccaGUACGCGgccCGCcUGCGgCCCg -3'
miRNA:   3'- -UGGG----UAUGCGCauuGUGcAUGUgGGG- -5'
5756 5' -51.9 NC_001806.1 + 140692 0.66 0.985239
Target:  5'- cGCCC--GCGUGccgcGCugGaACGCCCCc -3'
miRNA:   3'- -UGGGuaUGCGCau--UGugCaUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 152030 0.66 0.985239
Target:  5'- cGCCCGccGCGCGcgcGCACGc-CGCCCg -3'
miRNA:   3'- -UGGGUa-UGCGCau-UGUGCauGUGGGg -5'
5756 5' -51.9 NC_001806.1 + 61527 0.66 0.985239
Target:  5'- aGCCCGUacACGCGgucgGGCgggggcuugGCGUGC-CCgCCg -3'
miRNA:   3'- -UGGGUA--UGCGCa---UUG---------UGCAUGuGG-GG- -5'
5756 5' -51.9 NC_001806.1 + 354 0.66 0.985061
Target:  5'- cGCCCGccuuuuuUGCGC---GCGCGcGCGCCCg -3'
miRNA:   3'- -UGGGU-------AUGCGcauUGUGCaUGUGGGg -5'
5756 5' -51.9 NC_001806.1 + 152064 0.66 0.985061
Target:  5'- cGCCCGccuuuuuUGCGC---GCGCGcGCGCCCg -3'
miRNA:   3'- -UGGGU-------AUGCGcauUGUGCaUGUGGGg -5'
5756 5' -51.9 NC_001806.1 + 80313 0.66 0.984336
Target:  5'- cGCCCAccacaucUGCGCGcccccgggggcauuUGAC-CGUcagccgccuguccGCGCCCCa -3'
miRNA:   3'- -UGGGU-------AUGCGC--------------AUUGuGCA-------------UGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 50448 0.67 0.984151
Target:  5'- cGCCUuUGCGgaCGUGGCGCGggaggagcuguuucGCGCCCUg -3'
miRNA:   3'- -UGGGuAUGC--GCAUUGUGCa-------------UGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 67041 0.67 0.984151
Target:  5'- gGCCCGUACcgcaucggcgGCGUcgcGCGCGUcguacgaggcggcacACGCCgCCa -3'
miRNA:   3'- -UGGGUAUG----------CGCAu--UGUGCA---------------UGUGG-GG- -5'
5756 5' -51.9 NC_001806.1 + 17825 0.67 0.983393
Target:  5'- uGCCCGa--GUGgaccGugGCGUGgACCCCg -3'
miRNA:   3'- -UGGGUaugCGCa---UugUGCAUgUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 56159 0.67 0.983393
Target:  5'- cGCCCGacCGCcc-GCcCGUugACCCCg -3'
miRNA:   3'- -UGGGUauGCGcauUGuGCAugUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 95320 0.67 0.983393
Target:  5'- cGCCCAaGgGCG--GCGCGg--GCCCCg -3'
miRNA:   3'- -UGGGUaUgCGCauUGUGCaugUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 102846 0.67 0.983393
Target:  5'- cGCCC---CGCGgccCGCGUACACCa- -3'
miRNA:   3'- -UGGGuauGCGCauuGUGCAUGUGGgg -5'
5756 5' -51.9 NC_001806.1 + 31142 0.67 0.983393
Target:  5'- cCCCGagaccGCGgGUAAcCACGUgAUGCCCCc -3'
miRNA:   3'- uGGGUa----UGCgCAUU-GUGCA-UGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 105198 0.67 0.981377
Target:  5'- cCCCAUAuCGgG-GACACGUuauuUACCCUg -3'
miRNA:   3'- uGGGUAU-GCgCaUUGUGCAu---GUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.