miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5757 3' -57.8 NC_001806.1 + 29187 0.66 0.839245
Target:  5'- -gGGcGCCCCcccucgagaGGAcGggGGGAGCGACGAg -3'
miRNA:   3'- caUC-CGGGG---------CCU-CgaCCUUCGUUGCU- -5'
5757 3' -57.8 NC_001806.1 + 3325 0.66 0.839245
Target:  5'- -gGGGCCCgCGGGucccuccggccGCgGGggGCuGGCGGg -3'
miRNA:   3'- caUCCGGG-GCCU-----------CGaCCuuCG-UUGCU- -5'
5757 3' -57.8 NC_001806.1 + 98195 0.66 0.839245
Target:  5'- -aGGGCCCguUGGucgaggggcAGCUGGggGagaaCAACGAg -3'
miRNA:   3'- caUCCGGG--GCC---------UCGACCuuC----GUUGCU- -5'
5757 3' -57.8 NC_001806.1 + 42020 0.66 0.831012
Target:  5'- --uGGCCgCGGGGUUGGGGuCGugGGu -3'
miRNA:   3'- cauCCGGgGCCUCGACCUUcGUugCU- -5'
5757 3' -57.8 NC_001806.1 + 11516 0.66 0.831012
Target:  5'- cGUGGGCauCUgGGGGCUGuaaaucGGGCGACGGg -3'
miRNA:   3'- -CAUCCG--GGgCCUCGACc-----UUCGUUGCU- -5'
5757 3' -57.8 NC_001806.1 + 2122 0.66 0.831012
Target:  5'- --cGGCCCCGGcgaaGGCcaggucccgcgUGGAcAGCAGCa- -3'
miRNA:   3'- cauCCGGGGCC----UCG-----------ACCU-UCGUUGcu -5'
5757 3' -57.8 NC_001806.1 + 102257 0.66 0.831012
Target:  5'- --uGGCCCCGGcugaGGAAcGCGGCGGc -3'
miRNA:   3'- cauCCGGGGCCucgaCCUU-CGUUGCU- -5'
5757 3' -57.8 NC_001806.1 + 136969 0.66 0.822599
Target:  5'- -gGGGgCCCGcGAGCgUGGugcggucauGGCGGCGGc -3'
miRNA:   3'- caUCCgGGGC-CUCG-ACCu--------UCGUUGCU- -5'
5757 3' -57.8 NC_001806.1 + 2650 0.66 0.822599
Target:  5'- aGUAGGCCuCCaGGGC-GGcGGCcGCGGg -3'
miRNA:   3'- -CAUCCGG-GGcCUCGaCCuUCGuUGCU- -5'
5757 3' -57.8 NC_001806.1 + 27089 0.66 0.814014
Target:  5'- --uGGCCCgCGGAGCcGGcc-CGGCGAa -3'
miRNA:   3'- cauCCGGG-GCCUCGaCCuucGUUGCU- -5'
5757 3' -57.8 NC_001806.1 + 95388 0.66 0.814014
Target:  5'- uUGGGagcuCCCgGGGGC-GGggGCGAgGAc -3'
miRNA:   3'- cAUCC----GGGgCCUCGaCCuuCGUUgCU- -5'
5757 3' -57.8 NC_001806.1 + 2085 0.66 0.805265
Target:  5'- --cGGUCgCCGGcGCUGGcGAGCAGCc- -3'
miRNA:   3'- cauCCGG-GGCCuCGACC-UUCGUUGcu -5'
5757 3' -57.8 NC_001806.1 + 93434 0.66 0.805265
Target:  5'- --cGuGCCCUGGAGCgc--GGCAACGGc -3'
miRNA:   3'- cauC-CGGGGCCUCGaccuUCGUUGCU- -5'
5757 3' -57.8 NC_001806.1 + 44405 0.66 0.805265
Target:  5'- -gAGGCCgCGG-GCguuGAGCGACGAc -3'
miRNA:   3'- caUCCGGgGCCuCGaccUUCGUUGCU- -5'
5757 3' -57.8 NC_001806.1 + 23956 0.66 0.805265
Target:  5'- -gGGGCCgCCGGAGUgguccgccGAGcGCGGCGGg -3'
miRNA:   3'- caUCCGG-GGCCUCGac------CUU-CGUUGCU- -5'
5757 3' -57.8 NC_001806.1 + 49650 0.66 0.796361
Target:  5'- --cGGgCCCGGAGCUccGGGCGGCa- -3'
miRNA:   3'- cauCCgGGGCCUCGAccUUCGUUGcu -5'
5757 3' -57.8 NC_001806.1 + 122575 0.66 0.796361
Target:  5'- -gGGGCCCgUGGucuccgugaGGCUGGAGGCc-CGGa -3'
miRNA:   3'- caUCCGGG-GCC---------UCGACCUUCGuuGCU- -5'
5757 3' -57.8 NC_001806.1 + 94866 0.66 0.796361
Target:  5'- -gAGGCCgaCGcccuGCUGGAGGCGcACGAc -3'
miRNA:   3'- caUCCGGg-GCcu--CGACCUUCGU-UGCU- -5'
5757 3' -57.8 NC_001806.1 + 79047 0.66 0.796361
Target:  5'- -gAGGCCaCCgaGGAGCucccguuugUGGcGGGCGGCGAg -3'
miRNA:   3'- caUCCGG-GG--CCUCG---------ACC-UUCGUUGCU- -5'
5757 3' -57.8 NC_001806.1 + 22132 0.67 0.78731
Target:  5'- -gGGGCgCCCGaGGCggaGGAGGCG-CGAc -3'
miRNA:   3'- caUCCG-GGGCcUCGa--CCUUCGUuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.