miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5757 5' -58.6 NC_001806.1 + 9304 0.66 0.836506
Target:  5'- uCGCCGGCGgUCGCCCag-UUCGGcGACc -3'
miRNA:   3'- -GCGGCUGUgAGUGGGcagAGGUC-CUG- -5'
5757 5' -58.6 NC_001806.1 + 146873 0.66 0.836506
Target:  5'- aGCCGGguCGC-CAuguuuCCCGUCUgguccaCCAGGACc -3'
miRNA:   3'- gCGGCU--GUGaGU-----GGGCAGA------GGUCCUG- -5'
5757 5' -58.6 NC_001806.1 + 128544 0.66 0.836506
Target:  5'- aGCCaGACgGCg-GCCCGcgUCCAGGGCg -3'
miRNA:   3'- gCGG-CUG-UGagUGGGCagAGGUCCUG- -5'
5757 5' -58.6 NC_001806.1 + 123767 0.66 0.836506
Target:  5'- gCGCCccaGCg-GCCCcucUCUCCAGGACg -3'
miRNA:   3'- -GCGGcugUGagUGGGc--AGAGGUCCUG- -5'
5757 5' -58.6 NC_001806.1 + 73188 0.66 0.836506
Target:  5'- gCGCUGAagacucgcCGCUCGCCCGagCcCCcGGGCg -3'
miRNA:   3'- -GCGGCU--------GUGAGUGGGCa-GaGGuCCUG- -5'
5757 5' -58.6 NC_001806.1 + 47308 0.66 0.836506
Target:  5'- cCGCCGcC-CUCuuuaaCCGUCUCCucGACg -3'
miRNA:   3'- -GCGGCuGuGAGug---GGCAGAGGucCUG- -5'
5757 5' -58.6 NC_001806.1 + 19280 0.66 0.828368
Target:  5'- uCGuCCGACACcgacgCAUCCGUUUCCGuccccgugguGGAUu -3'
miRNA:   3'- -GC-GGCUGUGa----GUGGGCAGAGGU----------CCUG- -5'
5757 5' -58.6 NC_001806.1 + 46621 0.66 0.82006
Target:  5'- aCGUCGACGCg-GCCaCGgcgaCUCgAGGGCg -3'
miRNA:   3'- -GCGGCUGUGagUGG-GCa---GAGgUCCUG- -5'
5757 5' -58.6 NC_001806.1 + 30231 0.66 0.82006
Target:  5'- gGCCGugGCcCcgugcgugcgaGCgCCGcCUCCGGGGCc -3'
miRNA:   3'- gCGGCugUGaG-----------UG-GGCaGAGGUCCUG- -5'
5757 5' -58.6 NC_001806.1 + 70192 0.66 0.82006
Target:  5'- gGCCGACAacauagagCAgCUG-CUCCGGGAg -3'
miRNA:   3'- gCGGCUGUga------GUgGGCaGAGGUCCUg -5'
5757 5' -58.6 NC_001806.1 + 4162 0.66 0.82006
Target:  5'- cCGCCGuACAg-CACCCGcC-CCGGGGg -3'
miRNA:   3'- -GCGGC-UGUgaGUGGGCaGaGGUCCUg -5'
5757 5' -58.6 NC_001806.1 + 103031 0.66 0.82006
Target:  5'- cCGCCGcCGuCUC-CagCGcCUCCAGGGCg -3'
miRNA:   3'- -GCGGCuGU-GAGuGg-GCaGAGGUCCUG- -5'
5757 5' -58.6 NC_001806.1 + 52679 0.66 0.81922
Target:  5'- uCGCCuACACUCgacccccgcguccACCCGgaggUUCCGGaGGCg -3'
miRNA:   3'- -GCGGcUGUGAG-------------UGGGCa---GAGGUC-CUG- -5'
5757 5' -58.6 NC_001806.1 + 37769 0.66 0.811588
Target:  5'- gGCgGGCGCcuuUCGCuCCGgggCCGGGGCg -3'
miRNA:   3'- gCGgCUGUG---AGUG-GGCagaGGUCCUG- -5'
5757 5' -58.6 NC_001806.1 + 146916 0.66 0.802961
Target:  5'- aCGCCccGAUGUUC-CCCGUCUCCAuguccaggauGGGCa -3'
miRNA:   3'- -GCGG--CUGUGAGuGGGCAGAGGU----------CCUG- -5'
5757 5' -58.6 NC_001806.1 + 103941 0.66 0.801218
Target:  5'- gGCUGACGCggagCGUCCGUUgggcgacaaacaCCAGGACg -3'
miRNA:   3'- gCGGCUGUGa---GUGGGCAGa-----------GGUCCUG- -5'
5757 5' -58.6 NC_001806.1 + 132084 0.66 0.794187
Target:  5'- cCGCCGcCcCUCGCgCCGcUCUCCuGGuCg -3'
miRNA:   3'- -GCGGCuGuGAGUG-GGC-AGAGGuCCuG- -5'
5757 5' -58.6 NC_001806.1 + 116223 0.66 0.794187
Target:  5'- gGCCGACGuggCGCacgaauccuUCGUCUCCGGaGGCg -3'
miRNA:   3'- gCGGCUGUga-GUG---------GGCAGAGGUC-CUG- -5'
5757 5' -58.6 NC_001806.1 + 50932 0.67 0.767058
Target:  5'- cCGCCu-C-CUCAgcgccccgggccCCCGUgUCCGGGACg -3'
miRNA:   3'- -GCGGcuGuGAGU------------GGGCAgAGGUCCUG- -5'
5757 5' -58.6 NC_001806.1 + 7079 0.67 0.757774
Target:  5'- cCGCCGGCAUgCACCCcagagGUguucacgcacCUCgAGGACa -3'
miRNA:   3'- -GCGGCUGUGaGUGGG-----CA----------GAGgUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.