miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5758 3' -59.9 NC_001806.1 + 137329 0.66 0.739835
Target:  5'- gGUCUugGACUGUgUggugaCGGGCGCCacGCg -3'
miRNA:   3'- -UAGGugCUGGCAgA-----GCCCGUGGa-CGa -5'
5758 3' -59.9 NC_001806.1 + 144590 0.66 0.700976
Target:  5'- -gCCGCGGCUcUC-CGGGCcccCCUGCa -3'
miRNA:   3'- uaGGUGCUGGcAGaGCCCGu--GGACGa -5'
5758 3' -59.9 NC_001806.1 + 46425 0.66 0.700976
Target:  5'- uUCUGCG-CCGcggUCGGGCGCCUgGCg -3'
miRNA:   3'- uAGGUGCuGGCag-AGCCCGUGGA-CGa -5'
5758 3' -59.9 NC_001806.1 + 23153 0.67 0.671216
Target:  5'- cUCCGCGGCCGcCgccgcCGcGG-ACCUGCUg -3'
miRNA:   3'- uAGGUGCUGGCaGa----GC-CCgUGGACGA- -5'
5758 3' -59.9 NC_001806.1 + 84248 0.67 0.655218
Target:  5'- --aCACGGCCGggggCgCGGGCgcaccggcggagaauGCCUGCUg -3'
miRNA:   3'- uagGUGCUGGCa---GaGCCCG---------------UGGACGA- -5'
5758 3' -59.9 NC_001806.1 + 46544 0.67 0.65121
Target:  5'- cAUCCGCguGACgGUCUgcgaGGGCaaaaACCUGCUu -3'
miRNA:   3'- -UAGGUG--CUGgCAGAg---CCCG----UGGACGA- -5'
5758 3' -59.9 NC_001806.1 + 3590 0.67 0.65121
Target:  5'- -cCCGCGgcGCCGUacccggCGGGCACCgcgcGCUc -3'
miRNA:   3'- uaGGUGC--UGGCAga----GCCCGUGGa---CGA- -5'
5758 3' -59.9 NC_001806.1 + 50225 0.69 0.571192
Target:  5'- -aCCGCGACUGUCgCGuGGCcGCCcGCUa -3'
miRNA:   3'- uaGGUGCUGGCAGaGC-CCG-UGGaCGA- -5'
5758 3' -59.9 NC_001806.1 + 67866 0.69 0.55147
Target:  5'- -cCCACG-CCGUC-CGGGCuGCCcGCa -3'
miRNA:   3'- uaGGUGCuGGCAGaGCCCG-UGGaCGa -5'
5758 3' -59.9 NC_001806.1 + 30194 0.69 0.522298
Target:  5'- cGUCCGCGGCCGcgUCGGG-ACCcGCg -3'
miRNA:   3'- -UAGGUGCUGGCagAGCCCgUGGaCGa -5'
5758 3' -59.9 NC_001806.1 + 87399 0.69 0.522298
Target:  5'- -gCUGCGGCCGgacgCUUGGGCGCCUcccccccgGCg -3'
miRNA:   3'- uaGGUGCUGGCa---GAGCCCGUGGA--------CGa -5'
5758 3' -59.9 NC_001806.1 + 30912 0.71 0.421449
Target:  5'- uUCCGgGGCCGUCcccgCGGGCggccuacgcgcuACCUGCc -3'
miRNA:   3'- uAGGUgCUGGCAGa---GCCCG------------UGGACGa -5'
5758 3' -59.9 NC_001806.1 + 96631 0.72 0.40439
Target:  5'- --aCGCGACCGUCgccgCGGGCcacgccacCCUGCg -3'
miRNA:   3'- uagGUGCUGGCAGa---GCCCGu-------GGACGa -5'
5758 3' -59.9 NC_001806.1 + 133012 0.75 0.25937
Target:  5'- -gCCGgGGCCGUCUUGGaGCGCCUGg- -3'
miRNA:   3'- uaGGUgCUGGCAGAGCC-CGUGGACga -5'
5758 3' -59.9 NC_001806.1 + 103030 0.77 0.194605
Target:  5'- -gCCGCcGCCGUCUCcagcgccuccaGGGCGCCUGCg -3'
miRNA:   3'- uaGGUGcUGGCAGAG-----------CCCGUGGACGa -5'
5758 3' -59.9 NC_001806.1 + 10754 1.05 0.002333
Target:  5'- cAUCCACGACCGUCUCGGGCACCUGCUu -3'
miRNA:   3'- -UAGGUGCUGGCAGAGCCCGUGGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.