Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5758 | 5' | -54.9 | NC_001806.1 | + | 28 | 0.68 | 0.883259 |
Target: 5'- --cGCGcGACCCcCGGgGGGUGUGu- -3' miRNA: 3'- aguCGCuCUGGGuGCUgCCCACAUuc -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 2460 | 0.67 | 0.9153 |
Target: 5'- cCGGCG--GCCC-CGugGGG-GUGGGg -3' miRNA: 3'- aGUCGCucUGGGuGCugCCCaCAUUC- -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 3321 | 0.69 | 0.811196 |
Target: 5'- -aAGCGGGGCCCGCGggucccuccggccGCGGGgggcUGgcGGg -3' miRNA: 3'- agUCGCUCUGGGUGC-------------UGCCC----ACauUC- -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 4832 | 0.67 | 0.9153 |
Target: 5'- gCGGCGAGGCCgCGgGGuCGGGcGUcGGg -3' miRNA: 3'- aGUCGCUCUGG-GUgCU-GCCCaCAuUC- -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 5663 | 0.67 | 0.903182 |
Target: 5'- -gGGCGGGGCgCgAgGGCGGGUGg--- -3' miRNA: 3'- agUCGCUCUG-GgUgCUGCCCACauuc -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 6081 | 0.69 | 0.845668 |
Target: 5'- -gGGCG-GGCCCggGCGGCGGGgGgcGGg -3' miRNA: 3'- agUCGCuCUGGG--UGCUGCCCaCauUC- -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 10789 | 1.1 | 0.003263 |
Target: 5'- aUCAGCGAGACCCACGACGGGUGUAAGg -3' miRNA: 3'- -AGUCGCUCUGGGUGCUGCCCACAUUC- -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 12798 | 0.66 | 0.933714 |
Target: 5'- cCGGCGAucaGGCCCAUGuuguuCGGGguggccgggggaugGUAAGg -3' miRNA: 3'- aGUCGCU---CUGGGUGCu----GCCCa-------------CAUUC- -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 21286 | 0.7 | 0.79426 |
Target: 5'- cCGGCGGGAcgggagggccCCCGCGGCGGGc----- -3' miRNA: 3'- aGUCGCUCU----------GGGUGCUGCCCacauuc -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 23924 | 0.67 | 0.9153 |
Target: 5'- -gGGCGAGgaccugGCCgGCGGCGGGgccUGGGg -3' miRNA: 3'- agUCGCUC------UGGgUGCUGCCCac-AUUC- -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 25922 | 0.69 | 0.845668 |
Target: 5'- gCGGCGuGcgcGCgCGCGGCGGGcGUGGGg -3' miRNA: 3'- aGUCGCuC---UGgGUGCUGCCCaCAUUC- -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 33812 | 0.66 | 0.950208 |
Target: 5'- cCGGCGgguGGACUCGCGGgGGGccgGAGg -3' miRNA: 3'- aGUCGC---UCUGGGUGCUgCCCacaUUC- -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 51131 | 0.69 | 0.820736 |
Target: 5'- gUCGGgGAGGCgCGCGAcCGGGcUGgGAGg -3' miRNA: 3'- -AGUCgCUCUGgGUGCU-GCCC-ACaUUC- -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 54491 | 0.67 | 0.9153 |
Target: 5'- cUCGGUGGGGuCCCugGGUGGGggcugGUGAc -3' miRNA: 3'- -AGUCGCUCU-GGGugCUGCCCa----CAUUc -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 66530 | 0.7 | 0.766466 |
Target: 5'- gCGGCcAGGCCCGCGAgGGGg--AAGu -3' miRNA: 3'- aGUCGcUCUGGGUGCUgCCCacaUUC- -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 66818 | 0.66 | 0.950208 |
Target: 5'- -gAGCGGGGCCgGCc-CGGGUGg--- -3' miRNA: 3'- agUCGCUCUGGgUGcuGCCCACauuc -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 69685 | 0.72 | 0.67762 |
Target: 5'- -uGGCGAG-CCUGCGGCGGGcgcucGUGGGg -3' miRNA: 3'- agUCGCUCuGGGUGCUGCCCa----CAUUC- -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 72079 | 0.73 | 0.647005 |
Target: 5'- uUCGGgGAG-CCCGCGGCGGGccUGcugGAGa -3' miRNA: 3'- -AGUCgCUCuGGGUGCUGCCC--ACa--UUC- -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 72532 | 0.69 | 0.8536 |
Target: 5'- gUCGGCGuGGGCCCcCGGgaGGGgGUAGGg -3' miRNA: 3'- -AGUCGC-UCUGGGuGCUg-CCCaCAUUC- -5' |
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5758 | 5' | -54.9 | NC_001806.1 | + | 84883 | 0.75 | 0.525514 |
Target: 5'- cCGGCGGGACUCugGGCGuGGUGc--- -3' miRNA: 3'- aGUCGCUCUGGGugCUGC-CCACauuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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