miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5760 5' -49.1 NC_001806.1 + 63853 0.65 0.998524
Target:  5'- uGAGGGCGGGcAUGacGCUgcggucccggggCCGGAGUCg- -3'
miRNA:   3'- -CUUUUGUCC-UAU--CGAa-----------GGCCUCAGag -5'
5760 5' -49.1 NC_001806.1 + 2596 0.66 0.997933
Target:  5'- aGggGACGGGGaacAGCggguggUCCGuGAG-CUCg -3'
miRNA:   3'- -CuuUUGUCCUa--UCGa-----AGGC-CUCaGAG- -5'
5760 5' -49.1 NC_001806.1 + 111205 0.66 0.997055
Target:  5'- -----gGGGAUAGCcugcgcggCCGGGGcCUCg -3'
miRNA:   3'- cuuuugUCCUAUCGaa------GGCCUCaGAG- -5'
5760 5' -49.1 NC_001806.1 + 20989 0.67 0.995178
Target:  5'- cGAcgGCGGGGgucgucGGggUCCGuGGGUCUCg -3'
miRNA:   3'- -CUuuUGUCCUa-----UCgaAGGC-CUCAGAG- -5'
5760 5' -49.1 NC_001806.1 + 134517 0.67 0.994369
Target:  5'- --cGACGGGGUggcguGGCUUCgGGGGcaguUCUCc -3'
miRNA:   3'- cuuUUGUCCUA-----UCGAAGgCCUC----AGAG- -5'
5760 5' -49.1 NC_001806.1 + 13477 0.67 0.994369
Target:  5'- ----gUAGGGUuGUUUCCGGAcGUCUUc -3'
miRNA:   3'- cuuuuGUCCUAuCGAAGGCCU-CAGAG- -5'
5760 5' -49.1 NC_001806.1 + 22319 0.67 0.993455
Target:  5'- uGGAcCAGGccuGCUUCCGGA-UCUCg -3'
miRNA:   3'- cUUUuGUCCuauCGAAGGCCUcAGAG- -5'
5760 5' -49.1 NC_001806.1 + 146159 0.68 0.986962
Target:  5'- --uGGCAGGAU-GCUUUCGGGGaUCg- -3'
miRNA:   3'- cuuUUGUCCUAuCGAAGGCCUC-AGag -5'
5760 5' -49.1 NC_001806.1 + 88778 0.7 0.960519
Target:  5'- -uGAACGGccacccGGUGGcCUUCCGGAGUCa- -3'
miRNA:   3'- cuUUUGUC------CUAUC-GAAGGCCUCAGag -5'
5760 5' -49.1 NC_001806.1 + 150488 0.71 0.956634
Target:  5'- cGGAAGCGGGAagGGCggCCGGGGcCg- -3'
miRNA:   3'- -CUUUUGUCCUa-UCGaaGGCCUCaGag -5'
5760 5' -49.1 NC_001806.1 + 59137 0.72 0.927877
Target:  5'- -uGGugAGGGcAGCcgggCCGGGGUCUCg -3'
miRNA:   3'- cuUUugUCCUaUCGaa--GGCCUCAGAG- -5'
5760 5' -49.1 NC_001806.1 + 133195 0.74 0.850615
Target:  5'- cAAGACGcGGAUgcGGCUUCCGGGGUgaUCg -3'
miRNA:   3'- cUUUUGU-CCUA--UCGAAGGCCUCAg-AG- -5'
5760 5' -49.1 NC_001806.1 + 10305 1.09 0.01153
Target:  5'- gGAAAACAGGAUAGCUUCCGGAGUCUCc -3'
miRNA:   3'- -CUUUUGUCCUAUCGAAGGCCUCAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.