miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5761 3' -50.6 NC_001806.1 + 49185 0.66 0.996765
Target:  5'- gGGUgggGUUCaUGGggUACC-UGCGUGc -3'
miRNA:   3'- -CCAaa-CAAG-ACCuuGUGGgGCGCAUc -5'
5761 3' -50.6 NC_001806.1 + 57384 0.66 0.994812
Target:  5'- cGGUggcugUCguugcGGAGCAUCCCGCGc-- -3'
miRNA:   3'- -CCAaaca-AGa----CCUUGUGGGGCGCauc -5'
5761 3' -50.6 NC_001806.1 + 102358 0.66 0.993144
Target:  5'- cGGggccgccgGGAGCACCCCGUGg-- -3'
miRNA:   3'- -CCaaacaagaCCUUGUGGGGCGCauc -5'
5761 3' -50.6 NC_001806.1 + 13534 0.66 0.993045
Target:  5'- cGGUgcGUUUaGGAGCACgCUGCGg-- -3'
miRNA:   3'- -CCAaaCAAGaCCUUGUGgGGCGCauc -5'
5761 3' -50.6 NC_001806.1 + 140703 0.66 0.993045
Target:  5'- ----cGcgCUGGAACGCCCC-CGUc- -3'
miRNA:   3'- ccaaaCaaGACCUUGUGGGGcGCAuc -5'
5761 3' -50.6 NC_001806.1 + 99138 0.67 0.991997
Target:  5'- uGGUUUGUUUguuUGGuACGCCUuuugugUGUGUGGg -3'
miRNA:   3'- -CCAAACAAG---ACCuUGUGGG------GCGCAUC- -5'
5761 3' -50.6 NC_001806.1 + 37973 0.67 0.9865
Target:  5'- gGGUUgcgauugGUUCUgGGGGCACgCCgGCGgGGg -3'
miRNA:   3'- -CCAAa------CAAGA-CCUUGUG-GGgCGCaUC- -5'
5761 3' -50.6 NC_001806.1 + 84771 0.67 0.9865
Target:  5'- ---cUGUccCUGGAgcACACCCUGUGUAc -3'
miRNA:   3'- ccaaACAa-GACCU--UGUGGGGCGCAUc -5'
5761 3' -50.6 NC_001806.1 + 4690 0.67 0.9865
Target:  5'- cGGUccgUGgggUCcGGAuACGCgCCGCGUAGc -3'
miRNA:   3'- -CCAa--ACa--AGaCCU-UGUGgGGCGCAUC- -5'
5761 3' -50.6 NC_001806.1 + 119586 0.68 0.980753
Target:  5'- cGGUgcUGgcgggUCUGGAGCcCCCCgGCGgGGg -3'
miRNA:   3'- -CCAa-ACa----AGACCUUGuGGGG-CGCaUC- -5'
5761 3' -50.6 NC_001806.1 + 3975 0.69 0.970475
Target:  5'- ----gGUUCUGGAGCcaccccagGCCuCCGCGUccGGg -3'
miRNA:   3'- ccaaaCAAGACCUUG--------UGG-GGCGCA--UC- -5'
5761 3' -50.6 NC_001806.1 + 31212 0.7 0.93924
Target:  5'- ------cUCUGGAugACCCC-CGUGGg -3'
miRNA:   3'- ccaaacaAGACCUugUGGGGcGCAUC- -5'
5761 3' -50.6 NC_001806.1 + 44197 0.71 0.92898
Target:  5'- cGGUUgagUCcGGAACACCCCugGgGUAGu -3'
miRNA:   3'- -CCAAacaAGaCCUUGUGGGG--CgCAUC- -5'
5761 3' -50.6 NC_001806.1 + 133356 0.73 0.846669
Target:  5'- aGUgugGUUCUGGAAC-UCCCGCGa-- -3'
miRNA:   3'- cCAaa-CAAGACCUUGuGGGGCGCauc -5'
5761 3' -50.6 NC_001806.1 + 10054 1.11 0.008063
Target:  5'- gGGUUUGUUCUGGAACACCCCGCGUAGc -3'
miRNA:   3'- -CCAAACAAGACCUUGUGGGGCGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.