miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5761 5' -56.6 NC_001806.1 + 95542 0.68 0.797434
Target:  5'- uGGCCagccugGGGCGcuGCGUCCGCGagcagcgcggggaGCUCGa -3'
miRNA:   3'- -CCGG------UCCGCucUGCAGGUGCa------------UGAGC- -5'
5761 5' -56.6 NC_001806.1 + 99485 0.66 0.917856
Target:  5'- cGGCgCGGGcCGuGucaACGUCCACGUguGCUgCGc -3'
miRNA:   3'- -CCG-GUCC-GCuC---UGCAGGUGCA--UGA-GC- -5'
5761 5' -56.6 NC_001806.1 + 100516 0.68 0.800957
Target:  5'- aGCCGGGCGGuAUGUCCGUGgACUCc -3'
miRNA:   3'- cCGGUCCGCUcUGCAGGUGCaUGAGc -5'
5761 5' -56.6 NC_001806.1 + 101160 0.75 0.435367
Target:  5'- aGCCAGcGCG-GugGUCCACGUuaaUCGg -3'
miRNA:   3'- cCGGUC-CGCuCugCAGGUGCAug-AGC- -5'
5761 5' -56.6 NC_001806.1 + 109235 0.76 0.3844
Target:  5'- gGGCCGGGCGGGGCGgaaUCCugGgcCcCGg -3'
miRNA:   3'- -CCGGUCCGCUCUGC---AGGugCauGaGC- -5'
5761 5' -56.6 NC_001806.1 + 113551 0.66 0.912132
Target:  5'- uGGCCcGGCucGugGUCCA-GUGCaUCa -3'
miRNA:   3'- -CCGGuCCGcuCugCAGGUgCAUG-AGc -5'
5761 5' -56.6 NC_001806.1 + 116654 0.67 0.880136
Target:  5'- cGCUgcuGGCG-GACGUCCAacaACUCGg -3'
miRNA:   3'- cCGGu--CCGCuCUGCAGGUgcaUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 125775 0.66 0.892947
Target:  5'- uGGCCgugguccucgaggAGGCGGGuAUGguggaCCGCGgACUCGg -3'
miRNA:   3'- -CCGG-------------UCCGCUC-UGCa----GGUGCaUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 129088 0.71 0.677502
Target:  5'- cGGCCAGGUGcgugacuGugGUCCGCGcGC-Ca -3'
miRNA:   3'- -CCGGUCCGCu------CugCAGGUGCaUGaGc -5'
5761 5' -56.6 NC_001806.1 + 132555 0.71 0.687453
Target:  5'- aGGuCCGGGgGGGAccCGUCC-CGUACUUu -3'
miRNA:   3'- -CC-GGUCCgCUCU--GCAGGuGCAUGAGc -5'
5761 5' -56.6 NC_001806.1 + 133345 0.7 0.71701
Target:  5'- aGCCAGGCGGgaguGugGUUCugGaACUCc -3'
miRNA:   3'- cCGGUCCGCU----CugCAGGugCaUGAGc -5'
5761 5' -56.6 NC_001806.1 + 134789 0.68 0.834808
Target:  5'- -cCCAGGCGcGACGUCgACGcGCgCGa -3'
miRNA:   3'- ccGGUCCGCuCUGCAGgUGCaUGaGC- -5'
5761 5' -56.6 NC_001806.1 + 134866 0.68 0.80966
Target:  5'- aGGCCAGGCgGAGcaGCGUCUGCugGCUa- -3'
miRNA:   3'- -CCGGUCCG-CUC--UGCAGGUGcaUGAgc -5'
5761 5' -56.6 NC_001806.1 + 137926 0.72 0.607283
Target:  5'- cGCCAGaGCGAGaACGUgcUCACGUACcUCa -3'
miRNA:   3'- cCGGUC-CGCUC-UGCA--GGUGCAUG-AGc -5'
5761 5' -56.6 NC_001806.1 + 151154 0.68 0.800957
Target:  5'- --gCAGGCGcAGGCGcgCCAgGUGCUCc -3'
miRNA:   3'- ccgGUCCGC-UCUGCa-GGUgCAUGAGc -5'
5761 5' -56.6 NC_001806.1 + 151449 0.69 0.745935
Target:  5'- gGGCgGcGGCGGGGCGgCCGCGggcgcGCUCc -3'
miRNA:   3'- -CCGgU-CCGCUCUGCaGGUGCa----UGAGc -5'
5761 5' -56.6 NC_001806.1 + 151554 0.67 0.865822
Target:  5'- cGGCCGGGgGcGGCGggggCCGCGaugGCggCGg -3'
miRNA:   3'- -CCGGUCCgCuCUGCa---GGUGCa--UGa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.