Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5761 | 5' | -56.6 | NC_001806.1 | + | 49857 | 0.67 | 0.865822 |
Target: 5'- aGCaGGGCGAGGCGUuggCCugGUAUaUCa -3' miRNA: 3'- cCGgUCCGCUCUGCA---GGugCAUG-AGc -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 151554 | 0.67 | 0.865822 |
Target: 5'- cGGCCGGGgGcGGCGggggCCGCGaugGCggCGg -3' miRNA: 3'- -CCGGUCCgCuCUGCa---GGUGCa--UGa-GC- -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 4760 | 0.67 | 0.865822 |
Target: 5'- cGCCGgcGGCGucggcuGCGUCguCGUACUCGu -3' miRNA: 3'- cCGGU--CCGCuc----UGCAGguGCAUGAGC- -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 4431 | 0.67 | 0.861368 |
Target: 5'- uGGcCCGGGCGGGggcgGCGUCCgcccgggggcugccgGCGccgcGCUCGa -3' miRNA: 3'- -CC-GGUCCGCUC----UGCAGG---------------UGCa---UGAGC- -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 10002 | 0.67 | 0.858358 |
Target: 5'- cGCCAGcccCGGGACGggcUCCAUGUGagcCUCGg -3' miRNA: 3'- cCGGUCc--GCUCUGC---AGGUGCAU---GAGC- -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 2766 | 0.67 | 0.858358 |
Target: 5'- gGGCgCGGGCGGGccuGCG-CCGCGgcgGCcCGg -3' miRNA: 3'- -CCG-GUCCGCUC---UGCaGGUGCa--UGaGC- -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 4899 | 0.67 | 0.850697 |
Target: 5'- aGCCAgcugucgcGGCGAGacgGCGUCCccgGCGUcCUCGc -3' miRNA: 3'- cCGGU--------CCGCUC---UGCAGG---UGCAuGAGC- -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 134789 | 0.68 | 0.834808 |
Target: 5'- -cCCAGGCGcGACGUCgACGcGCgCGa -3' miRNA: 3'- ccGGUCCGCuCUGCAGgUGCaUGaGC- -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 37789 | 0.68 | 0.834808 |
Target: 5'- gGGCCgGGGCGcGGGgGUCCGCGgg--CGg -3' miRNA: 3'- -CCGG-UCCGC-UCUgCAGGUGCaugaGC- -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 12826 | 0.68 | 0.824096 |
Target: 5'- uGGCCGGGgGAugguaaggcgucgcGGCGUCCugGa--UCGa -3' miRNA: 3'- -CCGGUCCgCU--------------CUGCAGGugCaugAGC- -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 3086 | 0.68 | 0.80966 |
Target: 5'- aGGuCCGcGGCGGcGGCGgCCGCGgaGCUCGg -3' miRNA: 3'- -CC-GGU-CCGCU-CUGCaGGUGCa-UGAGC- -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 134866 | 0.68 | 0.80966 |
Target: 5'- aGGCCAGGCgGAGcaGCGUCUGCugGCUa- -3' miRNA: 3'- -CCGGUCCG-CUC--UGCAGGUGcaUGAgc -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 7039 | 0.68 | 0.80966 |
Target: 5'- gGGCCGGGCGAcccaGAUGUUUacuuaaaagGCGUGC-CGu -3' miRNA: 3'- -CCGGUCCGCU----CUGCAGG---------UGCAUGaGC- -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 35502 | 0.68 | 0.80966 |
Target: 5'- cGGagaGGGCGAGGCGUCggaGCGgggccGCUCa -3' miRNA: 3'- -CCgg-UCCGCUCUGCAGg--UGCa----UGAGc -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 151154 | 0.68 | 0.800957 |
Target: 5'- --gCAGGCGcAGGCGcgCCAgGUGCUCc -3' miRNA: 3'- ccgGUCCGC-UCUGCa-GGUgCAUGAGc -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 100516 | 0.68 | 0.800957 |
Target: 5'- aGCCGGGCGGuAUGUCCGUGgACUCc -3' miRNA: 3'- cCGGUCCGCUcUGCAGGUGCaUGAGc -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 95542 | 0.68 | 0.797434 |
Target: 5'- uGGCCagccugGGGCGcuGCGUCCGCGagcagcgcggggaGCUCGa -3' miRNA: 3'- -CCGG------UCCGCucUGCAGGUGCa------------UGAGC- -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 93448 | 0.69 | 0.792106 |
Target: 5'- cGGCaacGGCGAGugGUCgACGgACgCGg -3' miRNA: 3'- -CCGgu-CCGCUCugCAGgUGCaUGaGC- -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 38224 | 0.69 | 0.792106 |
Target: 5'- cGUCGGaCGAGGCGUCUggGUGCUgGg -3' miRNA: 3'- cCGGUCcGCUCUGCAGGugCAUGAgC- -5' |
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5761 | 5' | -56.6 | NC_001806.1 | + | 3444 | 0.69 | 0.755397 |
Target: 5'- cGGCCAGGCacucGACGgCCACGcgGC-CGg -3' miRNA: 3'- -CCGGUCCGcu--CUGCaGGUGCa-UGaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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