miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5762 3' -63.6 NC_001806.1 + 22873 0.66 0.560131
Target:  5'- gCGgCCGUCccgGGGCugGCCgggGCccggcccGCCAGCc -3'
miRNA:   3'- -GCgGGCGG---UCCGugCGGa--CG-------CGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 43778 0.66 0.560131
Target:  5'- cCGCCC-CCggAGGUuacgcugGCGCCUGcCGCCcgaAACg -3'
miRNA:   3'- -GCGGGcGG--UCCG-------UGCGGAC-GCGG---UUG- -5'
5762 3' -63.6 NC_001806.1 + 84138 0.66 0.551467
Target:  5'- gCGCaUCGCgGGGCACGCa--CGCgCGACg -3'
miRNA:   3'- -GCG-GGCGgUCCGUGCGgacGCG-GUUG- -5'
5762 3' -63.6 NC_001806.1 + 27233 0.66 0.548588
Target:  5'- aGCCCGCCcucacagggcGGGC-CGCCUcgggggcgggacugGCcaaucggcggccGCCAGCg -3'
miRNA:   3'- gCGGGCGG----------UCCGuGCGGA--------------CG------------CGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 56822 0.66 0.541889
Target:  5'- uCGCCC-CCGGGCcCGCCaacacCGCCGc- -3'
miRNA:   3'- -GCGGGcGGUCCGuGCGGac---GCGGUug -5'
5762 3' -63.6 NC_001806.1 + 76570 0.66 0.541889
Target:  5'- uGCUgGCC--GCGCGCgaGCGCCGGg -3'
miRNA:   3'- gCGGgCGGucCGUGCGgaCGCGGUUg -5'
5762 3' -63.6 NC_001806.1 + 139453 0.66 0.541889
Target:  5'- uCGCCaucugcuuuaCGCCcGGCAa-CCUGCGCCucAACa -3'
miRNA:   3'- -GCGG----------GCGGuCCGUgcGGACGCGG--UUG- -5'
5762 3' -63.6 NC_001806.1 + 23030 0.66 0.541889
Target:  5'- gCGCCUGCgCGGGgaccuGCGCgUG-GCCGGCg -3'
miRNA:   3'- -GCGGGCG-GUCCg----UGCGgACgCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 23569 0.66 0.541889
Target:  5'- gGCCCaGCCAcacGGCgGCGCCcGCgGCCGc- -3'
miRNA:   3'- gCGGG-CGGU---CCG-UGCGGaCG-CGGUug -5'
5762 3' -63.6 NC_001806.1 + 53307 0.66 0.541889
Target:  5'- uCGCCCGCCAucGaGCcaACGCCcUGa-CCAACg -3'
miRNA:   3'- -GCGGGCGGU--C-CG--UGCGG-ACgcGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 22397 0.66 0.541889
Target:  5'- uGCCCcacCUGGGCuACGCCaugGCGgCCGGCc -3'
miRNA:   3'- gCGGGc--GGUCCG-UGCGGa--CGC-GGUUG- -5'
5762 3' -63.6 NC_001806.1 + 86342 0.66 0.540934
Target:  5'- aCGCCUGCagucccuCGGGCAgggGUC-GCGCCAGCc -3'
miRNA:   3'- -GCGGGCG-------GUCCGUg--CGGaCGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 22521 0.66 0.536168
Target:  5'- gCGCCgCGCCuacgcgccccuguuGGCGCGCgagaacgcgGCGCUGACg -3'
miRNA:   3'- -GCGG-GCGGu-------------CCGUGCGga-------CGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 126125 0.66 0.532366
Target:  5'- gGCCgCGCgGacgacggcGGCGagGCCgGCGCCGACa -3'
miRNA:   3'- gCGG-GCGgU--------CCGUg-CGGaCGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 23307 0.66 0.532366
Target:  5'- gGCCCgGCCcGGC-CGCCcggagGCGgCGGCc -3'
miRNA:   3'- gCGGG-CGGuCCGuGCGGa----CGCgGUUG- -5'
5762 3' -63.6 NC_001806.1 + 59255 0.66 0.532366
Target:  5'- aGCCagaaacuaCGgCAGGCcCGCC-GCGCUAGCc -3'
miRNA:   3'- gCGG--------GCgGUCCGuGCGGaCGCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 83481 0.66 0.522905
Target:  5'- uGCCaaauGCCuGGGgGCGCCccacUGCGCCGcuaGCa -3'
miRNA:   3'- gCGGg---CGG-UCCgUGCGG----ACGCGGU---UG- -5'
5762 3' -63.6 NC_001806.1 + 41702 0.66 0.522905
Target:  5'- cCGCCCGCCguguccuccccGGGaCugGCggGCGCaAACg -3'
miRNA:   3'- -GCGGGCGG-----------UCC-GugCGgaCGCGgUUG- -5'
5762 3' -63.6 NC_001806.1 + 29947 0.66 0.522905
Target:  5'- -uCCCGCCAGucGCGaGCCgcgGCGCCGc- -3'
miRNA:   3'- gcGGGCGGUC--CGUgCGGa--CGCGGUug -5'
5762 3' -63.6 NC_001806.1 + 23838 0.66 0.522905
Target:  5'- gGCCCGCUgcgccgcauGGCG-GCCuggaUGCGCCAGa -3'
miRNA:   3'- gCGGGCGGu--------CCGUgCGG----ACGCGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.