miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5762 5' -58.8 NC_001806.1 + 6050 0.66 0.77338
Target:  5'- gGCGCCgUGC-CCGACuccgcgccGGCCCCGGggGCGg -3'
miRNA:   3'- -UGCGG-GUGuGGCUG--------UUGGGGUCa-CGU- -5'
5762 5' -58.8 NC_001806.1 + 23512 0.66 0.77338
Target:  5'- cGCGCCgGCccGCCGAgGGCCCCGacccccuggGCGg -3'
miRNA:   3'- -UGCGGgUG--UGGCUgUUGGGGUca-------CGU- -5'
5762 5' -58.8 NC_001806.1 + 26808 0.66 0.77338
Target:  5'- cGCGCCUGCGCCuGCGACgCgCGG-GCGg -3'
miRNA:   3'- -UGCGGGUGUGGcUGUUG-GgGUCaCGU- -5'
5762 5' -58.8 NC_001806.1 + 103045 0.66 0.77338
Target:  5'- aGCGCCUccaggGCGCCuGCGAUCUC-GUGCAc -3'
miRNA:   3'- -UGCGGG-----UGUGGcUGUUGGGGuCACGU- -5'
5762 5' -58.8 NC_001806.1 + 149778 0.66 0.772457
Target:  5'- gGCGCCCggccccucaccucGCGCUgggGGCGGCCCuCAGgccgGCGg -3'
miRNA:   3'- -UGCGGG-------------UGUGG---CUGUUGGG-GUCa---CGU- -5'
5762 5' -58.8 NC_001806.1 + 140161 0.66 0.772457
Target:  5'- cGCGCCUcCAcccCCGACAaccgccuGCCCCGGgacgGCc -3'
miRNA:   3'- -UGCGGGuGU---GGCUGU-------UGGGGUCa---CGu -5'
5762 5' -58.8 NC_001806.1 + 1549 0.66 0.771531
Target:  5'- -gGCCCGCgccaccgggccggGCCGGCGcgcaccgccucgcGCCCCAGcGCc -3'
miRNA:   3'- ugCGGGUG-------------UGGCUGU-------------UGGGGUCaCGu -5'
5762 5' -58.8 NC_001806.1 + 34822 0.66 0.76409
Target:  5'- cCGCCCAU-CCG-CGGCCCCucccgGCAg -3'
miRNA:   3'- uGCGGGUGuGGCuGUUGGGGuca--CGU- -5'
5762 5' -58.8 NC_001806.1 + 93998 0.66 0.76409
Target:  5'- gGCG-CCGCGagaUGGCcGCCCCGGUGUc -3'
miRNA:   3'- -UGCgGGUGUg--GCUGuUGGGGUCACGu -5'
5762 5' -58.8 NC_001806.1 + 86650 0.66 0.76409
Target:  5'- uCGCCCACgGCCGuCAGCCCg---GCGg -3'
miRNA:   3'- uGCGGGUG-UGGCuGUUGGGgucaCGU- -5'
5762 5' -58.8 NC_001806.1 + 79307 0.66 0.76409
Target:  5'- cACGCUauuCACCGACGccACCCCcg-GCGa -3'
miRNA:   3'- -UGCGGgu-GUGGCUGU--UGGGGucaCGU- -5'
5762 5' -58.8 NC_001806.1 + 65480 0.66 0.763155
Target:  5'- gGCGCCCGCGCaccacgucuccguCGAUGAUCaUGGUGCAg -3'
miRNA:   3'- -UGCGGGUGUG-------------GCUGUUGGgGUCACGU- -5'
5762 5' -58.8 NC_001806.1 + 73981 0.67 0.754687
Target:  5'- aAUGCCCGCcccgGCCGggGCGGCCCCgcAGgggGCu -3'
miRNA:   3'- -UGCGGGUG----UGGC--UGUUGGGG--UCa--CGu -5'
5762 5' -58.8 NC_001806.1 + 137576 0.67 0.754687
Target:  5'- cGCGCCCugGCCGc---CUCCGGggGCGa -3'
miRNA:   3'- -UGCGGGugUGGCuguuGGGGUCa-CGU- -5'
5762 5' -58.8 NC_001806.1 + 125309 0.67 0.754687
Target:  5'- -gGCCCugGCCGAgGacACCCCucGUGg- -3'
miRNA:   3'- ugCGGGugUGGCUgU--UGGGGu-CACgu -5'
5762 5' -58.8 NC_001806.1 + 109655 0.67 0.754687
Target:  5'- uGCGCCCGCACgCG-CAGCCCgGauauuaGCAc -3'
miRNA:   3'- -UGCGGGUGUG-GCuGUUGGGgUca----CGU- -5'
5762 5' -58.8 NC_001806.1 + 93853 0.67 0.754687
Target:  5'- aACGCaCGCGCCGcCGACuCCCGGcuUGCc -3'
miRNA:   3'- -UGCGgGUGUGGCuGUUG-GGGUC--ACGu -5'
5762 5' -58.8 NC_001806.1 + 89540 0.67 0.754687
Target:  5'- gGCGCCCcgGCCGGCGG-CCCGGUuuauucGCGu -3'
miRNA:   3'- -UGCGGGugUGGCUGUUgGGGUCA------CGU- -5'
5762 5' -58.8 NC_001806.1 + 20720 0.67 0.751844
Target:  5'- -gGCCCGCcgggggggcgggggGCCGGCGGCCuCCGcUGCu -3'
miRNA:   3'- ugCGGGUG--------------UGGCUGUUGG-GGUcACGu -5'
5762 5' -58.8 NC_001806.1 + 4484 0.67 0.735573
Target:  5'- gAC-CCCGC-CCGACGGCCCgCGccucgcGUGCGu -3'
miRNA:   3'- -UGcGGGUGuGGCUGUUGGG-GU------CACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.