miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5763 3' -60.2 NC_001806.1 + 21287 0.66 0.741982
Target:  5'- cGGCGGgacgggaggGCCCccg-CGGCGggcACCGACg -3'
miRNA:   3'- -CCGCCag-------CGGGucaaGCCGC---UGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 76310 0.66 0.741982
Target:  5'- cGCGGUgcgcaaCGaCCCGG--CGGCGGCCGcCg -3'
miRNA:   3'- cCGCCA------GC-GGGUCaaGCCGCUGGCuG- -5'
5763 3' -60.2 NC_001806.1 + 23215 0.66 0.741982
Target:  5'- cGGCGG-CGgCCAGcgcacCGGaCGccGCCGACg -3'
miRNA:   3'- -CCGCCaGCgGGUCaa---GCC-GC--UGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 37747 0.66 0.732591
Target:  5'- uGGUGG-CGUCgAuGgugUCGGCGGCgGGCg -3'
miRNA:   3'- -CCGCCaGCGGgU-Ca--AGCCGCUGgCUG- -5'
5763 3' -60.2 NC_001806.1 + 5941 0.66 0.732591
Target:  5'- gGGCGGgacCGCCCcaagGGggCGG-GGCCGcCg -3'
miRNA:   3'- -CCGCCa--GCGGG----UCaaGCCgCUGGCuG- -5'
5763 3' -60.2 NC_001806.1 + 131993 0.66 0.731647
Target:  5'- gGGcCGGUgGCCCuGUUCGccccgcuGCGuAUCGGCu -3'
miRNA:   3'- -CC-GCCAgCGGGuCAAGC-------CGC-UGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 144836 0.67 0.723119
Target:  5'- cGGCGGUCcggGCCCcGUcCGGacccgcucGCCGGCa -3'
miRNA:   3'- -CCGCCAG---CGGGuCAaGCCgc------UGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 22871 0.67 0.723119
Target:  5'- uGGCGGcCGuCCCGGggcuggcCGGgGcCCGGCc -3'
miRNA:   3'- -CCGCCaGC-GGGUCaa-----GCCgCuGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 20312 0.67 0.722168
Target:  5'- gGGCGGUccCGCCCgccggccaaugggGGggCGGCaaGGCgGGCg -3'
miRNA:   3'- -CCGCCA--GCGGG-------------UCaaGCCG--CUGgCUG- -5'
5763 3' -60.2 NC_001806.1 + 2640 0.67 0.713575
Target:  5'- cGCGGggaGCaguaggccuCCAGggCGGCGGCCG-Cg -3'
miRNA:   3'- cCGCCag-CG---------GGUCaaGCCGCUGGCuG- -5'
5763 3' -60.2 NC_001806.1 + 20715 0.67 0.713575
Target:  5'- gGGUGGgccCGCCgGGggggCgGGgGGCCGGCg -3'
miRNA:   3'- -CCGCCa--GCGGgUCaa--G-CCgCUGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 22647 0.67 0.703967
Target:  5'- cGCGGUgccCGCCgGGUaCGGCG-CCG-Cg -3'
miRNA:   3'- cCGCCA---GCGGgUCAaGCCGCuGGCuG- -5'
5763 3' -60.2 NC_001806.1 + 121008 0.67 0.703967
Target:  5'- uGGCGcGUCGUUCGGg-CGGaCGAgCGGCu -3'
miRNA:   3'- -CCGC-CAGCGGGUCaaGCC-GCUgGCUG- -5'
5763 3' -60.2 NC_001806.1 + 73119 0.67 0.703967
Target:  5'- gGGCcgccGGUCGCCgAGgcgGGCGAggaCGACg -3'
miRNA:   3'- -CCG----CCAGCGGgUCaagCCGCUg--GCUG- -5'
5763 3' -60.2 NC_001806.1 + 6081 0.67 0.703003
Target:  5'- gGGCGG--GCCCGGg-CGGCGGggggcgggucucuCCGGCg -3'
miRNA:   3'- -CCGCCagCGGGUCaaGCCGCU-------------GGCUG- -5'
5763 3' -60.2 NC_001806.1 + 104705 0.67 0.701074
Target:  5'- cGGCGGUgguaaugacaagCGCCCAGauaacaaUgGGCaugccuuaugccguGACCGACg -3'
miRNA:   3'- -CCGCCA------------GCGGGUCa------AgCCG--------------CUGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 22418 0.67 0.694303
Target:  5'- uGGCGGcCGgCCGcUUCGGCuggGGCCuGGCg -3'
miRNA:   3'- -CCGCCaGCgGGUcAAGCCG---CUGG-CUG- -5'
5763 3' -60.2 NC_001806.1 + 5074 0.67 0.694303
Target:  5'- cGCGGUCuggGCUCGGggugggCGGCGGCCc-- -3'
miRNA:   3'- cCGCCAG---CGGGUCaa----GCCGCUGGcug -5'
5763 3' -60.2 NC_001806.1 + 69260 0.67 0.684591
Target:  5'- cGcCGG-CGCCCAGcagCGGCuGCUGGCu -3'
miRNA:   3'- cC-GCCaGCGGGUCaa-GCCGcUGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 4745 0.67 0.684591
Target:  5'- gGGcCGGg-GCCCGGUcgcCGGCGGCguCGGCu -3'
miRNA:   3'- -CC-GCCagCGGGUCAa--GCCGCUG--GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.