miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5763 5' -54.7 NC_001806.1 + 66021 0.66 0.940527
Target:  5'- gGGGUGGGGCGCgg-GCCAGuuucaguGAaacccaaaaGGa -3'
miRNA:   3'- -CCUACCCCGCGgaaUGGUCuu-----CUg--------CC- -5'
5763 5' -54.7 NC_001806.1 + 151219 0.66 0.940527
Target:  5'- cGGAaGGGGCGCg--AggGGggGugGGa -3'
miRNA:   3'- -CCUaCCCCGCGgaaUggUCuuCugCC- -5'
5763 5' -54.7 NC_001806.1 + 29976 0.67 0.935751
Target:  5'- ---gGGGGCGUCUggccccuCCGGggGGguUGGg -3'
miRNA:   3'- ccuaCCCCGCGGAau-----GGUCuuCU--GCC- -5'
5763 5' -54.7 NC_001806.1 + 6078 0.67 0.935751
Target:  5'- cGGggGcGGGC-CCggGCggCGGggGGCGGg -3'
miRNA:   3'- -CCuaC-CCCGcGGaaUG--GUCuuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 15086 0.67 0.934273
Target:  5'- ---cGGGGCGCgCgggggaguuguugggAUCGGggGAUGGg -3'
miRNA:   3'- ccuaCCCCGCG-Gaa-------------UGGUCuuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 66429 0.67 0.930739
Target:  5'- cGGUGGGGCGCCcccgcagguCCGGcuGccaGCGGu -3'
miRNA:   3'- cCUACCCCGCGGaau------GGUCuuC---UGCC- -5'
5763 5' -54.7 NC_001806.1 + 12833 0.67 0.929189
Target:  5'- gGGAUGGuaaggcgucgcGGCGuCCUggaucgacgguaugUGCCAGuuuGGugGGa -3'
miRNA:   3'- -CCUACC-----------CCGC-GGA--------------AUGGUCu--UCugCC- -5'
5763 5' -54.7 NC_001806.1 + 143117 0.67 0.92549
Target:  5'- ---gGGGGCGUggcUGCCGGGAGgggccGCGGa -3'
miRNA:   3'- ccuaCCCCGCGga-AUGGUCUUC-----UGCC- -5'
5763 5' -54.7 NC_001806.1 + 34752 0.67 0.92549
Target:  5'- gGGAUcaaaGGGGgGCaaaGCCGGcGGGGCGGu -3'
miRNA:   3'- -CCUA----CCCCgCGgaaUGGUC-UUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 114003 0.67 0.920002
Target:  5'- cGGAUGaccgGCCgcACCGGggGGCGGa -3'
miRNA:   3'- -CCUACcccgCGGaaUGGUCuuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 46435 0.67 0.920002
Target:  5'- cGGUcGGGCGCCUggcggccaugcaUGcCCGGAuGGCGGc -3'
miRNA:   3'- cCUAcCCCGCGGA------------AU-GGUCUuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 59137 0.67 0.920002
Target:  5'- uGGUGaGGGCaGCCggGCCGGGGucuCGGg -3'
miRNA:   3'- cCUAC-CCCG-CGGaaUGGUCUUcu-GCC- -5'
5763 5' -54.7 NC_001806.1 + 119552 0.67 0.914277
Target:  5'- aGcgGGGGCGCCau----GggGGCGGc -3'
miRNA:   3'- cCuaCCCCGCGGaaugguCuuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 65321 0.67 0.914277
Target:  5'- cGGUGGGGaCGUCggccgucugggUACCGGuAGACGu -3'
miRNA:   3'- cCUACCCC-GCGGa----------AUGGUCuUCUGCc -5'
5763 5' -54.7 NC_001806.1 + 77851 0.67 0.914277
Target:  5'- aGAUGGGGgGCCUcgaUGGAugcGGCGGc -3'
miRNA:   3'- cCUACCCCgCGGAaugGUCUu--CUGCC- -5'
5763 5' -54.7 NC_001806.1 + 33623 0.68 0.908316
Target:  5'- gGGgcGGGGgGCCggaUACCcacacGGGCGGg -3'
miRNA:   3'- -CCuaCCCCgCGGa--AUGGucu--UCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 23945 0.68 0.904627
Target:  5'- cGGGgccugGGGGgGCC--GCCGGAGugguccgccgagcgcGGCGGg -3'
miRNA:   3'- -CCUa----CCCCgCGGaaUGGUCUU---------------CUGCC- -5'
5763 5' -54.7 NC_001806.1 + 147687 0.68 0.902121
Target:  5'- gGGccGGGGCGCgggggcggGCCccGGAGGCGGc -3'
miRNA:   3'- -CCuaCCCCGCGgaa-----UGGu-CUUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 134001 0.68 0.901489
Target:  5'- aGAUGGGaCGCCaUACaCAGccacccacccaccAAGACGGa -3'
miRNA:   3'- cCUACCCcGCGGaAUG-GUC-------------UUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 15023 0.68 0.900854
Target:  5'- gGGucGUGGGGCGagUUGCCAGcggcccgauaauGGugGGg -3'
miRNA:   3'- -CC--UACCCCGCggAAUGGUCu-----------UCugCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.