miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5764 3' -53 NC_001806.1 + 24404 0.66 0.977743
Target:  5'- cCCGAcGCgCCGCCGcuGCGCcuGUGcCGCGGCg -3'
miRNA:   3'- aGGUU-UG-GGUGGC--UGUG--UAC-GUGCUG- -5'
5764 3' -53 NC_001806.1 + 7013 0.66 0.977743
Target:  5'- gCCAGACCCAacccCCGGCccCA-GUugGGCc -3'
miRNA:   3'- aGGUUUGGGU----GGCUGu-GUaCGugCUG- -5'
5764 3' -53 NC_001806.1 + 78622 0.66 0.977743
Target:  5'- gCCGccACCCACCG-CACcccCGCGGCg -3'
miRNA:   3'- aGGUu-UGGGUGGCuGUGuacGUGCUG- -5'
5764 3' -53 NC_001806.1 + 122729 0.66 0.977743
Target:  5'- aCCAcgUCCGCCGGCGC--GCACu-- -3'
miRNA:   3'- aGGUuuGGGUGGCUGUGuaCGUGcug -5'
5764 3' -53 NC_001806.1 + 128842 0.66 0.977743
Target:  5'- aCCAGACCCACC-ACGCcguccGCGCc-- -3'
miRNA:   3'- aGGUUUGGGUGGcUGUGua---CGUGcug -5'
5764 3' -53 NC_001806.1 + 1711 0.66 0.977743
Target:  5'- cCCGAGgCCGCCGcccggccguccaGCGCcggcaGCACGGCc -3'
miRNA:   3'- aGGUUUgGGUGGC------------UGUGua---CGUGCUG- -5'
5764 3' -53 NC_001806.1 + 113103 0.66 0.977743
Target:  5'- gCCGGcCCCGCCGcAgACAUGCA--GCa -3'
miRNA:   3'- aGGUUuGGGUGGC-UgUGUACGUgcUG- -5'
5764 3' -53 NC_001806.1 + 126185 0.66 0.977743
Target:  5'- cCCAgcGACCuCGCCGAagagaACGUGCAU-ACg -3'
miRNA:   3'- aGGU--UUGG-GUGGCUg----UGUACGUGcUG- -5'
5764 3' -53 NC_001806.1 + 138139 0.66 0.977743
Target:  5'- aCCAAcCCCGCCaACcuccCcgGCugGACg -3'
miRNA:   3'- aGGUUuGGGUGGcUGu---GuaCGugCUG- -5'
5764 3' -53 NC_001806.1 + 147562 0.66 0.977743
Target:  5'- gCCGcGCgCCACCGuCGCAcGCGCccGGCa -3'
miRNA:   3'- aGGUuUG-GGUGGCuGUGUaCGUG--CUG- -5'
5764 3' -53 NC_001806.1 + 101494 0.66 0.977743
Target:  5'- cUgGAGCCCGCCGuuUACGggGUAUGACc -3'
miRNA:   3'- aGgUUUGGGUGGCu-GUGUa-CGUGCUG- -5'
5764 3' -53 NC_001806.1 + 50334 0.66 0.977501
Target:  5'- --gGAGgCCGCCuuccuggGGCGCGUGCugGAUg -3'
miRNA:   3'- aggUUUgGGUGG-------CUGUGUACGugCUG- -5'
5764 3' -53 NC_001806.1 + 104204 0.66 0.975497
Target:  5'- cCCAggUCCACUucgcauauuaagguGACGCGUGUggccucgaauaccgaGCGACc -3'
miRNA:   3'- aGGUuuGGGUGG--------------CUGUGUACG---------------UGCUG- -5'
5764 3' -53 NC_001806.1 + 138756 0.66 0.975237
Target:  5'- cCCAAAUCUucggggguGCCGACGCAgGCGucgguaauggcCGACg -3'
miRNA:   3'- aGGUUUGGG--------UGGCUGUGUaCGU-----------GCUG- -5'
5764 3' -53 NC_001806.1 + 95181 0.66 0.975237
Target:  5'- aUCGAggcGCUCAUCcGCGCGUGCuACGACc -3'
miRNA:   3'- aGGUU---UGGGUGGcUGUGUACG-UGCUG- -5'
5764 3' -53 NC_001806.1 + 22119 0.66 0.975237
Target:  5'- cCCGGGCCUcuggggggcGcCCGAgGCGgaggagGCGCGACg -3'
miRNA:   3'- aGGUUUGGG---------U-GGCUgUGUa-----CGUGCUG- -5'
5764 3' -53 NC_001806.1 + 106778 0.66 0.975237
Target:  5'- gCUGGACgCCuCCGcCGCGUGgGCGGCu -3'
miRNA:   3'- aGGUUUG-GGuGGCuGUGUACgUGCUG- -5'
5764 3' -53 NC_001806.1 + 90986 0.66 0.975237
Target:  5'- gCCAggguaaGACCC-CgCGGgGCggGCGCGACg -3'
miRNA:   3'- aGGU------UUGGGuG-GCUgUGuaCGUGCUG- -5'
5764 3' -53 NC_001806.1 + 78938 0.66 0.975237
Target:  5'- cCgGGGCCCGCCGuguCugGUGCucgugGACa -3'
miRNA:   3'- aGgUUUGGGUGGCu--GugUACGug---CUG- -5'
5764 3' -53 NC_001806.1 + 22468 0.66 0.975237
Target:  5'- gCCAuGAgCCGCCGAUACGaccGCGCG-Ca -3'
miRNA:   3'- aGGU-UUgGGUGGCUGUGUa--CGUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.