miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5765 3' -57.9 NC_001806.1 + 123199 0.66 0.850149
Target:  5'- cCCGGGUCGcccgcagggugGCgGAauggaccGAGAUGcCGCCCa -3'
miRNA:   3'- aGGCCCGGU-----------UGgUU-------CUCUGCaGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 139944 0.66 0.843108
Target:  5'- gCCGGGacagCAACCAGaagcucgaacgcGGGugGgaCGCCCa -3'
miRNA:   3'- aGGCCCg---GUUGGUU------------CUCugCa-GCGGG- -5'
5765 3' -57.9 NC_001806.1 + 49370 0.66 0.842317
Target:  5'- cCCGGGCCcgaugcggcccguAGCCAgucGGuGcGCGgUCGCCUg -3'
miRNA:   3'- aGGCCCGG-------------UUGGU---UCuC-UGC-AGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 44619 0.66 0.842317
Target:  5'- aCCGGcGUCAGCUcgccggcauagacGAGGGAC--CGCCCu -3'
miRNA:   3'- aGGCC-CGGUUGG-------------UUCUCUGcaGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 100852 0.66 0.840728
Target:  5'- aCCGGuGUCGuaggugacgauaguGCC--GAGGCGcCGCCCg -3'
miRNA:   3'- aGGCC-CGGU--------------UGGuuCUCUGCaGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 72088 0.66 0.835111
Target:  5'- cCCGcGGCgGGCCugcuGGAGACacaaUGCCCc -3'
miRNA:   3'- aGGC-CCGgUUGGu---UCUCUGca--GCGGG- -5'
5765 3' -57.9 NC_001806.1 + 54129 0.66 0.834302
Target:  5'- cCCgGGGCCcaggGGCCGGuAGGCGUguuccgaUGCCCg -3'
miRNA:   3'- aGG-CCCGG----UUGGUUcUCUGCA-------GCGGG- -5'
5765 3' -57.9 NC_001806.1 + 71038 0.66 0.833491
Target:  5'- cCCGcGGCCGACCGcgucgugcuuacGAGcCGUCGCgaCCu -3'
miRNA:   3'- aGGC-CCGGUUGGUu-----------CUCuGCAGCG--GG- -5'
5765 3' -57.9 NC_001806.1 + 30468 0.66 0.831863
Target:  5'- cUCCGGcGCCGccccgcuccccuccGCCGccucugucgagcaGGAGGCGgcggugCGUCCg -3'
miRNA:   3'- -AGGCC-CGGU--------------UGGU-------------UCUCUGCa-----GCGGG- -5'
5765 3' -57.9 NC_001806.1 + 34425 0.67 0.826938
Target:  5'- gCCGGGCCgGGCCGGGuGGGCGggGUUUg -3'
miRNA:   3'- aGGCCCGG-UUGGUUC-UCUGCagCGGG- -5'
5765 3' -57.9 NC_001806.1 + 69743 0.67 0.826938
Target:  5'- uUCCGGucaacCCAGCCuucuccgcGAGACGgCGCUCa -3'
miRNA:   3'- -AGGCCc----GGUUGGuu------CUCUGCaGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 27080 0.67 0.826938
Target:  5'- cCCGGGCCcuGGCCcgcGGAGcCG--GCCCg -3'
miRNA:   3'- aGGCCCGG--UUGGu--UCUCuGCagCGGG- -5'
5765 3' -57.9 NC_001806.1 + 105697 0.67 0.826938
Target:  5'- cCCaGGGCucgCAGCCAAcgucGGGGCGgcaaGCCCu -3'
miRNA:   3'- aGG-CCCG---GUUGGUU----CUCUGCag--CGGG- -5'
5765 3' -57.9 NC_001806.1 + 139116 0.67 0.826938
Target:  5'- aCCGGcucGCC-GCgCGGGGGGCugauguccGUCGCCCu -3'
miRNA:   3'- aGGCC---CGGuUG-GUUCUCUG--------CAGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 124789 0.67 0.821952
Target:  5'- cCUGGGCCAgacGCUgcuGGAguuggugguuagcguGuACGUCGCCCc -3'
miRNA:   3'- aGGCCCGGU---UGGu--UCU---------------C-UGCAGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 53257 0.67 0.818595
Target:  5'- cCCGGGCCGcACCGGGcccc--CGCCCc -3'
miRNA:   3'- aGGCCCGGU-UGGUUCucugcaGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 32992 0.67 0.818595
Target:  5'- cCCGGGCCGggccGCCAcGGGGGCcg-GCCg -3'
miRNA:   3'- aGGCCCGGU----UGGU-UCUCUGcagCGGg -5'
5765 3' -57.9 NC_001806.1 + 76835 0.67 0.818595
Target:  5'- cCCGGGCCuccuACgCGAcaGGGCGcgCGCCUg -3'
miRNA:   3'- aGGCCCGGu---UG-GUUc-UCUGCa-GCGGG- -5'
5765 3' -57.9 NC_001806.1 + 12818 0.67 0.813511
Target:  5'- gUUCGGGgUGGCCGGGGGAUGguaaggcgucgcggCGUCCu -3'
miRNA:   3'- -AGGCCCgGUUGGUUCUCUGCa-------------GCGGG- -5'
5765 3' -57.9 NC_001806.1 + 74536 0.67 0.810948
Target:  5'- cCUGGGCCAGCagcuGGAcagcGACGcggccuuuguuccugCGCCCg -3'
miRNA:   3'- aGGCCCGGUUGgu--UCU----CUGCa--------------GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.