Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5765 | 5' | -49.2 | NC_001806.1 | + | 3091 | 0.72 | 0.935611 |
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Target: 5'- cGCGGcgGCGGCGGCCGcggAGCUcgg-CAg -3' miRNA: 3'- -CGCC--UGCCGCCGGUaa-UUGAaauaGU- -5' |
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| 5765 | 5' | -49.2 | NC_001806.1 | + | 33772 | 0.72 | 0.935611 |
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Target: 5'- gGCGGcuGCGGCGGCCGccGugUUcgGUCu -3' miRNA: 3'- -CGCC--UGCCGCCGGUaaUugAAa-UAGu -5' |
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| 5765 | 5' | -49.2 | NC_001806.1 | + | 2661 | 0.72 | 0.930332 |
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Target: 5'- -aGGGCGGCGGCCGcgGGCg------ -3' miRNA: 3'- cgCCUGCCGCCGGUaaUUGaaauagu -5' |
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| 5765 | 5' | -49.2 | NC_001806.1 | + | 86087 | 0.73 | 0.893176 |
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Target: 5'- cGCGGAgGGCGGCCAgccGCgcgaccGUCu -3' miRNA: 3'- -CGCCUgCCGCCGGUaauUGaaa---UAGu -5' |
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| 5765 | 5' | -49.2 | NC_001806.1 | + | 2998 | 0.74 | 0.871175 |
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Target: 5'- gGCGG-CGGCGGCCGccAGCgc-GUCGg -3' miRNA: 3'- -CGCCuGCCGCCGGUaaUUGaaaUAGU- -5' |
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| 5765 | 5' | -49.2 | NC_001806.1 | + | 29464 | 0.78 | 0.681458 |
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Target: 5'- -aGGGCGGgcaCGGCCGUgGACUUUAUCu -3' miRNA: 3'- cgCCUGCC---GCCGGUAaUUGAAAUAGu -5' |
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| 5765 | 5' | -49.2 | NC_001806.1 | + | 7887 | 1.11 | 0.009556 |
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Target: 5'- gGCGGACGGCGGCCAUUAACUUUAUCAc -3' miRNA: 3'- -CGCCUGCCGCCGGUAAUUGAAAUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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