miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5768 5' -59.5 NC_001806.1 + 2453 0.66 0.759495
Target:  5'- -gCGG-CCCCCGgcggcccCGugGGGGUGGg-- -3'
miRNA:   3'- agGCCuGGGGGC-------GUugCCCCACUauu -5'
5768 5' -59.5 NC_001806.1 + 3989 0.7 0.54358
Target:  5'- cCCaGGCCUCCGCGucCGGGGUGu--- -3'
miRNA:   3'- aGGcCUGGGGGCGUu-GCCCCACuauu -5'
5768 5' -59.5 NC_001806.1 + 6083 0.66 0.731977
Target:  5'- -gCGGGCCCggGCGGCGGGGggcgGGUc- -3'
miRNA:   3'- agGCCUGGGggCGUUGCCCCa---CUAuu -5'
5768 5' -59.5 NC_001806.1 + 7134 1.06 0.00223
Target:  5'- cUCCGGACCCCCGCAACGGGGUGAUAAu -3'
miRNA:   3'- -AGGCCUGGGGGCGUUGCCCCACUAUU- -5'
5768 5' -59.5 NC_001806.1 + 20658 0.69 0.582027
Target:  5'- -aCGGGCCCCCgGCGugccggcgucgggGCGGGGUcGUGc -3'
miRNA:   3'- agGCCUGGGGG-CGU-------------UGCCCCAcUAUu -5'
5768 5' -59.5 NC_001806.1 + 21299 0.71 0.48623
Target:  5'- --aGGGCCCCCGCGGCGGGc------ -3'
miRNA:   3'- aggCCUGGGGGCGUUGCCCcacuauu -5'
5768 5' -59.5 NC_001806.1 + 21435 0.68 0.630021
Target:  5'- cCCGGACCCCCGCcuuucGagccgacgacgaugACGGGGa----- -3'
miRNA:   3'- aGGCCUGGGGGCG-----U--------------UGCCCCacuauu -5'
5768 5' -59.5 NC_001806.1 + 21507 0.68 0.653078
Target:  5'- aCCGGGCCCCgGCc-CGGGGc----- -3'
miRNA:   3'- aGGCCUGGGGgCGuuGCCCCacuauu -5'
5768 5' -59.5 NC_001806.1 + 21915 0.7 0.524181
Target:  5'- gCCGGGCCCgCGCGGCGGuGGc----- -3'
miRNA:   3'- aGGCCUGGGgGCGUUGCC-CCacuauu -5'
5768 5' -59.5 NC_001806.1 + 22066 0.79 0.148996
Target:  5'- gCCGGGCCCCCGCcccCGGGGcgGGUGc -3'
miRNA:   3'- aGGCCUGGGGGCGuu-GCCCCa-CUAUu -5'
5768 5' -59.5 NC_001806.1 + 24917 0.67 0.683011
Target:  5'- gCCacGCCCCCGCGGCGGGaaguuGUGGa-- -3'
miRNA:   3'- aGGccUGGGGGCGUUGCCC-----CACUauu -5'
5768 5' -59.5 NC_001806.1 + 26882 0.72 0.423206
Target:  5'- cCCGcGACCCCCGCGacccccGCGcGGGUGc--- -3'
miRNA:   3'- aGGC-CUGGGGGCGU------UGC-CCCACuauu -5'
5768 5' -59.5 NC_001806.1 + 30268 0.66 0.751043
Target:  5'- cCCGG-CCCCCGCGccccggccccCGGGGcgGAg-- -3'
miRNA:   3'- aGGCCuGGGGGCGUu---------GCCCCa-CUauu -5'
5768 5' -59.5 NC_001806.1 + 30841 0.67 0.711602
Target:  5'- cUCGG-CCCCCGCGcugcuucugggccGCGGGGgccGAg-- -3'
miRNA:   3'- aGGCCuGGGGGCGU-------------UGCCCCa--CUauu -5'
5768 5' -59.5 NC_001806.1 + 31181 0.66 0.731977
Target:  5'- cCCGacGGCCCCCGCGuCGGaGUGGa-- -3'
miRNA:   3'- aGGC--CUGGGGGCGUuGCCcCACUauu -5'
5768 5' -59.5 NC_001806.1 + 32992 0.66 0.741556
Target:  5'- cCCGGGCCgggCCGCcACGGGGg----- -3'
miRNA:   3'- aGGCCUGGg--GGCGuUGCCCCacuauu -5'
5768 5' -59.5 NC_001806.1 + 33128 0.73 0.381306
Target:  5'- cCCGGACCgCCGCGGuCGGGGg----- -3'
miRNA:   3'- aGGCCUGGgGGCGUU-GCCCCacuauu -5'
5768 5' -59.5 NC_001806.1 + 46180 0.68 0.623001
Target:  5'- cCCGGGCCCCCcgaaccCAGC-GGGUGGc-- -3'
miRNA:   3'- aGGCCUGGGGGc-----GUUGcCCCACUauu -5'
5768 5' -59.5 NC_001806.1 + 47228 0.69 0.573095
Target:  5'- cCCGGcgGCCCCCccgcuguacGCAACGGGGcgccUGAg-- -3'
miRNA:   3'- aGGCC--UGGGGG---------CGUUGCCCC----ACUauu -5'
5768 5' -59.5 NC_001806.1 + 48283 0.68 0.643058
Target:  5'- cCCGGacgacgacGCCCCCGaagaGGCGGGGcUGGc-- -3'
miRNA:   3'- aGGCC--------UGGGGGCg---UUGCCCC-ACUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.