Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5768 | 5' | -59.5 | NC_001806.1 | + | 132028 | 0.68 | 0.623001 |
Target: 5'- cUCGGACCCaCGC-ACGGgacuGGUGGUGAa -3' miRNA: 3'- aGGCCUGGGgGCGuUGCC----CCACUAUU- -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 46180 | 0.68 | 0.623001 |
Target: 5'- cCCGGGCCCCCcgaaccCAGC-GGGUGGc-- -3' miRNA: 3'- aGGCCUGGGGGc-----GUUGcCCCACUauu -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 147083 | 0.69 | 0.590987 |
Target: 5'- uUCCGGgcacacuuccucgGCCCCCGCGgcccagaagcagcGCGGGGgccGAg-- -3' miRNA: 3'- -AGGCC-------------UGGGGGCGU-------------UGCCCCa--CUauu -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 20658 | 0.69 | 0.582027 |
Target: 5'- -aCGGGCCCCCgGCGugccggcgucgggGCGGGGUcGUGc -3' miRNA: 3'- agGCCUGGGGG-CGU-------------UGCCCCAcUAUu -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 47228 | 0.69 | 0.573095 |
Target: 5'- cCCGGcgGCCCCCccgcuguacGCAACGGGGcgccUGAg-- -3' miRNA: 3'- aGGCC--UGGGGG---------CGUUGCCCC----ACUauu -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 119598 | 0.69 | 0.573095 |
Target: 5'- gUCUGGAgCCCCC-CGGCGGGGg----- -3' miRNA: 3'- -AGGCCU-GGGGGcGUUGCCCCacuauu -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 96546 | 0.69 | 0.573095 |
Target: 5'- cCUGGcGCCCCCcCAACGGGG-GAc-- -3' miRNA: 3'- aGGCC-UGGGGGcGUUGCCCCaCUauu -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 3989 | 0.7 | 0.54358 |
Target: 5'- cCCaGGCCUCCGCGucCGGGGUGu--- -3' miRNA: 3'- aGGcCUGGGGGCGUu-GCCCCACuauu -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 72538 | 0.7 | 0.54358 |
Target: 5'- -gUGGGCCCCCGgGAgGGGGUa---- -3' miRNA: 3'- agGCCUGGGGGCgUUgCCCCAcuauu -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 21915 | 0.7 | 0.524181 |
Target: 5'- gCCGGGCCCgCGCGGCGGuGGc----- -3' miRNA: 3'- aGGCCUGGGgGCGUUGCC-CCacuauu -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 140955 | 0.7 | 0.524181 |
Target: 5'- uUCCGGGCCCCCGUGuaaagguUGGucaGGUGAg-- -3' miRNA: 3'- -AGGCCUGGGGGCGUu------GCC---CCACUauu -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 21299 | 0.71 | 0.48623 |
Target: 5'- --aGGGCCCCCGCGGCGGGc------ -3' miRNA: 3'- aggCCUGGGGGCGUUGCCCcacuauu -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 26882 | 0.72 | 0.423206 |
Target: 5'- cCCGcGACCCCCGCGacccccGCGcGGGUGc--- -3' miRNA: 3'- aGGC-CUGGGGGCGU------UGC-CCCACuauu -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 33128 | 0.73 | 0.381306 |
Target: 5'- cCCGGACCgCCGCGGuCGGGGg----- -3' miRNA: 3'- aGGCCUGGgGGCGUU-GCCCCacuauu -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 144599 | 0.75 | 0.279488 |
Target: 5'- cUCCGGGCCCCCcuGCAGcCGGGGcGGc-- -3' miRNA: 3'- -AGGCCUGGGGG--CGUU-GCCCCaCUauu -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 22066 | 0.79 | 0.148996 |
Target: 5'- gCCGGGCCCCCGCcccCGGGGcgGGUGc -3' miRNA: 3'- aGGCCUGGGGGCGuu-GCCCCa-CUAUu -5' |
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5768 | 5' | -59.5 | NC_001806.1 | + | 7134 | 1.06 | 0.00223 |
Target: 5'- cUCCGGACCCCCGCAACGGGGUGAUAAu -3' miRNA: 3'- -AGGCCUGGGGGCGUUGCCCCACUAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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