Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5770 | 5' | -51.7 | NC_001806.1 | + | 6363 | 1.06 | 0.009406 |
Target: 5'- aCAGAAACCCACCGGUCCGCCUUUUUUg -3' miRNA: 3'- -GUCUUUGGGUGGCCAGGCGGAAAAAA- -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 22924 | 0.67 | 0.975188 |
Target: 5'- gAGGGACCCGCgGGccCCGCUUc---- -3' miRNA: 3'- gUCUUUGGGUGgCCa-GGCGGAaaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 83387 | 0.67 | 0.972425 |
Target: 5'- uGGAccGGCCCuguCUGGUCUGCCg----- -3' miRNA: 3'- gUCU--UUGGGu--GGCCAGGCGGaaaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 26651 | 0.67 | 0.966246 |
Target: 5'- cCAGAGgcccgGCCCACCGccgCCGCCc----- -3' miRNA: 3'- -GUCUU-----UGGGUGGCca-GGCGGaaaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 23795 | 0.67 | 0.966246 |
Target: 5'- -cGggG-CCGCCGGgggCCGCCUcUUUg -3' miRNA: 3'- guCuuUgGGUGGCCa--GGCGGAaAAAa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 51040 | 0.67 | 0.966246 |
Target: 5'- --uGGGCCCGCgGGUCCGCgUg---- -3' miRNA: 3'- gucUUUGGGUGgCCAGGCGgAaaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 3324 | 0.67 | 0.962816 |
Target: 5'- -cGggGCCCGCgGGUCCcuccgGCCg----- -3' miRNA: 3'- guCuuUGGGUGgCCAGG-----CGGaaaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 47995 | 0.68 | 0.959151 |
Target: 5'- -cGAGGCCCGCCGG-CUGCg------ -3' miRNA: 3'- guCUUUGGGUGGCCaGGCGgaaaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 46846 | 0.68 | 0.959151 |
Target: 5'- aCAGccGCCC-UCGGUUCGCCUUc--- -3' miRNA: 3'- -GUCuuUGGGuGGCCAGGCGGAAaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 21587 | 0.66 | 0.977743 |
Target: 5'- ----cGCCCGCCGGcccagCCGCCg----- -3' miRNA: 3'- gucuuUGGGUGGCCa----GGCGGaaaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 85737 | 0.66 | 0.977743 |
Target: 5'- --cGAACCCugCGGUCCggaGCCg----- -3' miRNA: 3'- gucUUUGGGugGCCAGG---CGGaaaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 72645 | 0.66 | 0.980098 |
Target: 5'- cCGGggGaCgGCCGGUCCGUCg----- -3' miRNA: 3'- -GUCuuUgGgUGGCCAGGCGGaaaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 133000 | 0.66 | 0.986056 |
Target: 5'- uCAG-AGCCCuggGCCGGggCCGUCUUg--- -3' miRNA: 3'- -GUCuUUGGG---UGGCCa-GGCGGAAaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 123017 | 0.66 | 0.985882 |
Target: 5'- -uGAGGCCCGCCGacgccucGUCCGCg------ -3' miRNA: 3'- guCUUUGGGUGGC-------CAGGCGgaaaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 88362 | 0.66 | 0.984246 |
Target: 5'- -cGAAGgCCAUCGGggCCGCCg----- -3' miRNA: 3'- guCUUUgGGUGGCCa-GGCGGaaaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 21048 | 0.66 | 0.984246 |
Target: 5'- aGGuGACCUACCGugcuacGUCCGCCg----- -3' miRNA: 3'- gUCuUUGGGUGGC------CAGGCGGaaaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 73244 | 0.66 | 0.984056 |
Target: 5'- -cGAGGCCCACCcaaacguGG-CCGCCa----- -3' miRNA: 3'- guCUUUGGGUGG-------CCaGGCGGaaaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 147910 | 0.66 | 0.982263 |
Target: 5'- aGGggGCCCGuCCGGccccucggCCGCCc----- -3' miRNA: 3'- gUCuuUGGGU-GGCCa-------GGCGGaaaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 71270 | 0.66 | 0.982263 |
Target: 5'- cCAGGGACCUGgaGGUCCGCg------ -3' miRNA: 3'- -GUCUUUGGGUggCCAGGCGgaaaaaa -5' |
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5770 | 5' | -51.7 | NC_001806.1 | + | 28137 | 0.66 | 0.980098 |
Target: 5'- cCGGAGcgaguACCCGCCGGccugagggCCGCCc----- -3' miRNA: 3'- -GUCUU-----UGGGUGGCCa-------GGCGGaaaaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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