Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5772 | 3' | -68.3 | NC_001806.1 | + | 2524 | 0.71 | 0.195667 |
Target: 5'- cGGGGGC-GGGCCCGGcGCaCCGcGCggCg -3' miRNA: 3'- -CCCCCGcCCCGGGCC-CGgGGC-UGaaG- -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 2661 | 0.68 | 0.273416 |
Target: 5'- -aGGGCGGcGGCCgCGGGCgCCGcCg-- -3' miRNA: 3'- ccCCCGCC-CCGG-GCCCGgGGCuGaag -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 2724 | 0.74 | 0.11674 |
Target: 5'- aGGGGGuCGGGGCCCucggcGGGCCggcgCGACa-- -3' miRNA: 3'- -CCCCC-GCCCCGGG-----CCCGGg---GCUGaag -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 2764 | 0.66 | 0.374075 |
Target: 5'- cGGGGCGcgggcGGGCCUGcGCCgCGGCg-- -3' miRNA: 3'- cCCCCGC-----CCCGGGCcCGGgGCUGaag -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 2815 | 0.82 | 0.030004 |
Target: 5'- cGGGGGC-GGGCUCGGGCCCCGGg--- -3' miRNA: 3'- -CCCCCGcCCCGGGCCCGGGGCUgaag -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 2860 | 0.69 | 0.234409 |
Target: 5'- cGGGGaGgGGGGCgCGGGCgUCCGAg--- -3' miRNA: 3'- -CCCC-CgCCCCGgGCCCG-GGGCUgaag -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 3124 | 0.8 | 0.040545 |
Target: 5'- cGGGucccgcggcagcGCGGGGCCCaGGGCCCCGGCg-- -3' miRNA: 3'- cCCC------------CGCCCCGGG-CCCGGGGCUGaag -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 3316 | 0.72 | 0.166475 |
Target: 5'- cGGGGaaGCGGGGCCCgcGGGUCCCuccGGCc-- -3' miRNA: 3'- -CCCC--CGCCCCGGG--CCCGGGG---CUGaag -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 3350 | 0.81 | 0.032355 |
Target: 5'- gGGGGGCuGGcGGgCCGGGCCCCGGCc-- -3' miRNA: 3'- -CCCCCG-CC-CCgGGCCCGGGGCUGaag -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 4182 | 0.78 | 0.058908 |
Target: 5'- cGGGGGCgGGGGCCCGGcGCCgggccaCGGCUc- -3' miRNA: 3'- -CCCCCG-CCCCGGGCC-CGGg-----GCUGAag -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 4379 | 0.66 | 0.394667 |
Target: 5'- cGGGGGUccucgccgccgcccGGGGCuuGGGCg-CGGCcUCg -3' miRNA: 3'- -CCCCCG--------------CCCCGggCCCGggGCUGaAG- -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 4440 | 0.7 | 0.224157 |
Target: 5'- cGGGGGCGGcguccGCCCggGGGCUgCCGGCg-- -3' miRNA: 3'- -CCCCCGCCc----CGGG--CCCGG-GGCUGaag -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 4744 | 0.71 | 0.186897 |
Target: 5'- -cGGGcCGGGGCCCGGuCgCCGGCggcgUCg -3' miRNA: 3'- ccCCC-GCCCCGGGCCcGgGGCUGa---AG- -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 4828 | 0.68 | 0.304353 |
Target: 5'- cGGGGCGGcgaGGCCgCGGGgUCgGGCgUCg -3' miRNA: 3'- cCCCCGCC---CCGG-GCCCgGGgCUGaAG- -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 5089 | 0.69 | 0.249972 |
Target: 5'- gGGuGGGCGGcGGCCCgucggugGGGCCCgGGg--- -3' miRNA: 3'- -CC-CCCGCC-CCGGG-------CCCGGGgCUgaag -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 5231 | 0.68 | 0.310854 |
Target: 5'- gGGGGGagGGGGCgagacccaCGGaCCCCGACg-- -3' miRNA: 3'- -CCCCCg-CCCCGg-------GCCcGGGGCUGaag -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 5771 | 1.09 | 0.000284 |
Target: 5'- aGGGGGCGGGGCCCGGGCCCCGACUUCc -3' miRNA: 3'- -CCCCCGCCCCGGGCCCGGGGCUGAAG- -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 5957 | 0.69 | 0.23915 |
Target: 5'- aGGGGGCGGGGCCgcCGGGUaaaagaagugagaCgCGAagcguucgcaCUUCg -3' miRNA: 3'- -CCCCCGCCCCGG--GCCCG-------------GgGCU----------GAAG- -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 6078 | 0.71 | 0.195667 |
Target: 5'- cGGGGGC-GGGCCCGGGCggCGGg--- -3' miRNA: 3'- -CCCCCGcCCCGGGCCCGggGCUgaag -5' |
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5772 | 3' | -68.3 | NC_001806.1 | + | 6098 | 0.66 | 0.366635 |
Target: 5'- nGGGGGCGGGucucUCCGGcGCacauaaaggCCCGGCg-- -3' miRNA: 3'- -CCCCCGCCCc---GGGCC-CG---------GGGCUGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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