miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5776 5' -55.2 NC_001806.1 + 143115 0.68 0.87738
Target:  5'- cUGGGGGCGuggcugccggGAGGGGccGCGGAUGGg -3'
miRNA:   3'- uGCUCCUGC----------UUCUCCuaCGCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 51953 0.68 0.87738
Target:  5'- cCGGuGGGCGuccuGGAUGCuguGGACGACg -3'
miRNA:   3'- uGCU-CCUGCuucuCCUACG---CCUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 147780 0.68 0.870111
Target:  5'- cGCGGGGGgccCGggGcGGGggGCGGAgccUGGCa -3'
miRNA:   3'- -UGCUCCU---GCuuC-UCCuaCGCCU---GCUG- -5'
5776 5' -55.2 NC_001806.1 + 44388 0.68 0.870111
Target:  5'- cGCGuAGGaACGAccaGGAGGccGCGGGCGu- -3'
miRNA:   3'- -UGC-UCC-UGCU---UCUCCuaCGCCUGCug -5'
5776 5' -55.2 NC_001806.1 + 25310 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 25276 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 25242 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 25208 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 25174 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 25140 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 25106 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 25344 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 25378 0.69 0.813597
Target:  5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3'
miRNA:   3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 119552 0.69 0.813597
Target:  5'- aGCGGGGGCGccauGGGGGcgGCuGACG-Ca -3'
miRNA:   3'- -UGCUCCUGCu---UCUCCuaCGcCUGCuG- -5'
5776 5' -55.2 NC_001806.1 + 26825 0.69 0.820514
Target:  5'- cGCGcGGGCGggGAGGggGCGccggagccccccGCGACc -3'
miRNA:   3'- -UGCuCCUGCuuCUCCuaCGCc-----------UGCUG- -5'
5776 5' -55.2 NC_001806.1 + 34073 0.69 0.822226
Target:  5'- gGCGAGGAgacUGggGugGGGGUGuCGGugGGu -3'
miRNA:   3'- -UGCUCCU---GCuuC--UCCUAC-GCCugCUg -5'
5776 5' -55.2 NC_001806.1 + 65288 0.69 0.836494
Target:  5'- aGCGGGGAgGAGGAGGggGgcccccaagggccuCGGugGGg -3'
miRNA:   3'- -UGCUCCUgCUUCUCCuaC--------------GCCugCUg -5'
5776 5' -55.2 NC_001806.1 + 12666 0.69 0.838958
Target:  5'- uGCGAGGACGGcuGGucgucuucccGGAUGUGGGgGAg -3'
miRNA:   3'- -UGCUCCUGCU--UCu---------CCUACGCCUgCUg -5'
5776 5' -55.2 NC_001806.1 + 37790 0.69 0.838958
Target:  5'- gGCcGGGGCGcGGGGGuccGCGGGCGGg -3'
miRNA:   3'- -UGcUCCUGCuUCUCCua-CGCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 53105 0.69 0.804803
Target:  5'- aGCGAGGACGggGGGcGUGUcuACGAg -3'
miRNA:   3'- -UGCUCCUGCuuCUCcUACGccUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.