miRNA display CGI


Results 81 - 100 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5776 5' -55.2 NC_001806.1 + 14921 0.72 0.648916
Target:  5'- cUGAcGACGAAGAGGGUGUccaGGGCGGg -3'
miRNA:   3'- uGCUcCUGCUUCUCCUACG---CCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 89775 0.72 0.648916
Target:  5'- cGCGcGGGGCGuGGGAGGGgcugggGCGGAcCGGCa -3'
miRNA:   3'- -UGC-UCCUGC-UUCUCCUa-----CGCCU-GCUG- -5'
5776 5' -55.2 NC_001806.1 + 65705 0.72 0.66933
Target:  5'- cCGGGGcccgcgcuucgACgGGAGAGGAUGCGGcuggGCGGCu -3'
miRNA:   3'- uGCUCC-----------UG-CUUCUCCUACGCC----UGCUG- -5'
5776 5' -55.2 NC_001806.1 + 29647 0.72 0.670348
Target:  5'- -gGAGGAgGAGGGGGGgggagggaggaauagGCGGGCGGg -3'
miRNA:   3'- ugCUCCUgCUUCUCCUa--------------CGCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 143249 0.72 0.679495
Target:  5'- uGCGGGuugGggGGGGAUGUGGGCGGg -3'
miRNA:   3'- -UGCUCcugCuuCUCCUACGCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 51092 0.72 0.679495
Target:  5'- gAUGGGaGACGAGGGGGccgccgcccUGCGGGCGcACg -3'
miRNA:   3'- -UGCUC-CUGCUUCUCCu--------ACGCCUGC-UG- -5'
5776 5' -55.2 NC_001806.1 + 151287 0.72 0.679495
Target:  5'- cCGGGGcCGggGGgcGGcgGCGGugGGCc -3'
miRNA:   3'- uGCUCCuGCuuCU--CCuaCGCCugCUG- -5'
5776 5' -55.2 NC_001806.1 + 45305 0.72 0.679495
Target:  5'- cGCGGGGAgccgccCGgcGAGGAggGCGGGCG-Cg -3'
miRNA:   3'- -UGCUCCU------GCuuCUCCUa-CGCCUGCuG- -5'
5776 5' -55.2 NC_001806.1 + 103434 0.73 0.607994
Target:  5'- -gGGGGugGGAuGAGGggGCGcGAUGGCa -3'
miRNA:   3'- ugCUCCugCUU-CUCCuaCGC-CUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 28379 0.73 0.618216
Target:  5'- cCGGGGGCGccauguuAGGGGGUGCGGAacccccUGACc -3'
miRNA:   3'- uGCUCCUGCu------UCUCCUACGCCU------GCUG- -5'
5776 5' -55.2 NC_001806.1 + 21217 0.73 0.62845
Target:  5'- cGCGGaGACgGAGGAGGgcGgGGACGACc -3'
miRNA:   3'- -UGCUcCUG-CUUCUCCuaCgCCUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 57811 0.74 0.517618
Target:  5'- -gGGGGACuggaucugcgGgcGGGGGUGCGGugGGCg -3'
miRNA:   3'- ugCUCCUG----------CuuCUCCUACGCCugCUG- -5'
5776 5' -55.2 NC_001806.1 + 2833 0.74 0.517618
Target:  5'- cCGGGGGCGuGGAGGGgggcGCGGGCG-Cg -3'
miRNA:   3'- uGCUCCUGCuUCUCCUa---CGCCUGCuG- -5'
5776 5' -55.2 NC_001806.1 + 29596 0.74 0.517618
Target:  5'- gACGAccuGGACGAcgguGAGGcgGgGGGCGGCa -3'
miRNA:   3'- -UGCU---CCUGCUu---CUCCuaCgCCUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 6451 0.74 0.557293
Target:  5'- cGCGGGGGCGGAGGaggggggacgcGGggGCGGAgGAg -3'
miRNA:   3'- -UGCUCCUGCUUCU-----------CCuaCGCCUgCUg -5'
5776 5' -55.2 NC_001806.1 + 6495 0.74 0.557293
Target:  5'- cGCGGGGGCGGAGGaggggggacgcGGggGCGGAgGAg -3'
miRNA:   3'- -UGCUCCUGCUUCU-----------CCuaCGCCUgCUg -5'
5776 5' -55.2 NC_001806.1 + 6539 0.74 0.557293
Target:  5'- cGCGGGGGCGGAGGaggggggacgcGGggGCGGAgGAg -3'
miRNA:   3'- -UGCUCCUGCUUCU-----------CCuaCGCCUgCUg -5'
5776 5' -55.2 NC_001806.1 + 21710 0.74 0.567355
Target:  5'- gACGAGGACGAGGAcGAcGaCGGcaACGACg -3'
miRNA:   3'- -UGCUCCUGCUUCUcCUaC-GCC--UGCUG- -5'
5776 5' -55.2 NC_001806.1 + 143805 0.75 0.479117
Target:  5'- -aGGGGACGGagggAGGGGGUGaCGGGgGACg -3'
miRNA:   3'- ugCUCCUGCU----UCUCCUAC-GCCUgCUG- -5'
5776 5' -55.2 NC_001806.1 + 137592 0.75 0.46971
Target:  5'- cCGGGGGCGAGGAGu-UGCGGaACGAg -3'
miRNA:   3'- uGCUCCUGCUUCUCcuACGCC-UGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.