Results 41 - 60 of 109 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 149849 | 0.7 | 0.785837 |
Target: 5'- cAUGGGGgucguauGCGGcuGGAGGGUcGCGGACGGa -3' miRNA: 3'- -UGCUCC-------UGCU--UCUCCUA-CGCCUGCUg -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 133147 | 0.7 | 0.777517 |
Target: 5'- uGCGGGGGCGAuGGGGGUGCGuuCu-- -3' miRNA: 3'- -UGCUCCUGCUuCUCCUACGCcuGcug -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 62828 | 0.7 | 0.786754 |
Target: 5'- cCGAGaucuGCGccGAGGcgGCGGugGGCa -3' miRNA: 3'- uGCUCc---UGCuuCUCCuaCGCCugCUG- -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 9208 | 0.7 | 0.758661 |
Target: 5'- gGCGAGGGCgcggucgacguGgcGAGGG-GCGGGCGGu -3' miRNA: 3'- -UGCUCCUG-----------CuuCUCCUaCGCCUGCUg -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 25412 | 0.7 | 0.758661 |
Target: 5'- -aGGGGGCGAGG-GGcgGUGGugGuGCg -3' miRNA: 3'- ugCUCCUGCUUCuCCuaCGCCugC-UG- -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 71530 | 0.7 | 0.74906 |
Target: 5'- uGCGGgcGGGCGggGGGGGggGUGGAaGACc -3' miRNA: 3'- -UGCU--CCUGCuuCUCCUa-CGCCUgCUG- -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 25276 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 25242 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 25208 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 25174 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 25140 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 25106 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 25310 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 25344 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 25378 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 119552 | 0.69 | 0.813597 |
Target: 5'- aGCGGGGGCGccauGGGGGcgGCuGACG-Ca -3' miRNA: 3'- -UGCUCCUGCu---UCUCCuaCGcCUGCuG- -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 26825 | 0.69 | 0.820514 |
Target: 5'- cGCGcGGGCGggGAGGggGCGccggagccccccGCGACc -3' miRNA: 3'- -UGCuCCUGCuuCUCCuaCGCc-----------UGCUG- -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 34073 | 0.69 | 0.822226 |
Target: 5'- gGCGAGGAgacUGggGugGGGGUGuCGGugGGu -3' miRNA: 3'- -UGCUCCU---GCuuC--UCCUAC-GCCugCUg -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 65288 | 0.69 | 0.836494 |
Target: 5'- aGCGGGGAgGAGGAGGggGgcccccaagggccuCGGugGGg -3' miRNA: 3'- -UGCUCCUgCUUCUCCuaC--------------GCCugCUg -5' |
|||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 12666 | 0.69 | 0.838958 |
Target: 5'- uGCGAGGACGGcuGGucgucuucccGGAUGUGGGgGAg -3' miRNA: 3'- -UGCUCCUGCU--UCu---------CCUACGCCUgCUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home