Results 41 - 60 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5776 | 5' | -55.2 | NC_001806.1 | + | 133147 | 0.7 | 0.777517 |
Target: 5'- uGCGGGGGCGAuGGGGGUGCGuuCu-- -3' miRNA: 3'- -UGCUCCUGCUuCUCCUACGCcuGcug -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 149849 | 0.7 | 0.785837 |
Target: 5'- cAUGGGGgucguauGCGGcuGGAGGGUcGCGGACGGa -3' miRNA: 3'- -UGCUCC-------UGCU--UCUCCUA-CGCCUGCUg -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 145559 | 0.7 | 0.786754 |
Target: 5'- uGCGGGGGa-GGGGGGGUGUGGAaggaaaugcaCGGCg -3' miRNA: 3'- -UGCUCCUgcUUCUCCUACGCCU----------GCUG- -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 25649 | 0.7 | 0.786754 |
Target: 5'- gGCuGGGGCuGggGAGGggGCGGugGu- -3' miRNA: 3'- -UGcUCCUG-CuuCUCCuaCGCCugCug -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 145626 | 0.7 | 0.786754 |
Target: 5'- aGCGAGGAUacGGAGGAgugGCGGGUGcCg -3' miRNA: 3'- -UGCUCCUGcuUCUCCUa--CGCCUGCuG- -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 62828 | 0.7 | 0.786754 |
Target: 5'- cCGAGaucuGCGccGAGGcgGCGGugGGCa -3' miRNA: 3'- uGCUCc---UGCuuCUCCuaCGCCugCUG- -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 88137 | 0.69 | 0.804803 |
Target: 5'- -gGAGGACGugcuccaGGGcgGUGGugGACa -3' miRNA: 3'- ugCUCCUGCuuc----UCCuaCGCCugCUG- -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 127396 | 0.69 | 0.804803 |
Target: 5'- cCGGGGuuGAGGGGGGgggGgGGACGGu -3' miRNA: 3'- uGCUCCugCUUCUCCUa--CgCCUGCUg -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 53105 | 0.69 | 0.804803 |
Target: 5'- aGCGAGGACGggGGGcGUGUcuACGAg -3' miRNA: 3'- -UGCUCCUGCuuCUCcUACGccUGCUg -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 25106 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 25140 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 25174 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 25208 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 25242 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 25276 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 25344 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 25378 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 119552 | 0.69 | 0.813597 |
Target: 5'- aGCGGGGGCGccauGGGGGcgGCuGACG-Ca -3' miRNA: 3'- -UGCUCCUGCu---UCUCCuaCGcCUGCuG- -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 25310 | 0.69 | 0.813597 |
Target: 5'- -aGGGGGCGAGGggcGGGA-GgGGGCGAg -3' miRNA: 3'- ugCUCCUGCUUC---UCCUaCgCCUGCUg -5' |
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5776 | 5' | -55.2 | NC_001806.1 | + | 26825 | 0.69 | 0.820514 |
Target: 5'- cGCGcGGGCGggGAGGggGCGccggagccccccGCGACc -3' miRNA: 3'- -UGCuCCUGCuuCUCCuaCGCc-----------UGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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