Results 101 - 109 of 109 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5776 | 5' | -55.2 | NC_001806.1 | + | 66228 | 0.66 | 0.927336 |
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Target: 5'- uUGGGGGCGGAGcguuGUGUGGGCGGg -3' miRNA: 3'- uGCUCCUGCUUCucc-UACGCCUGCUg -5' |
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| 5776 | 5' | -55.2 | NC_001806.1 | + | 44510 | 0.66 | 0.927336 |
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Target: 5'- uGCcGGGACGguGAccGGgcGaCGGACGACa -3' miRNA: 3'- -UGcUCCUGCuuCU--CCuaC-GCCUGCUG- -5' |
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| 5776 | 5' | -55.2 | NC_001806.1 | + | 59884 | 0.66 | 0.932518 |
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Target: 5'- -gGAcGGACGAGGAGGccagugacGUGGACGcCu -3' miRNA: 3'- ugCU-CCUGCUUCUCCua------CGCCUGCuG- -5' |
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| 5776 | 5' | -55.2 | NC_001806.1 | + | 140432 | 0.66 | 0.932518 |
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Target: 5'- gUGAGGGuggcaUGggGGGGggGCGGuuacuCGGCc -3' miRNA: 3'- uGCUCCU-----GCuuCUCCuaCGCCu----GCUG- -5' |
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| 5776 | 5' | -55.2 | NC_001806.1 | + | 64652 | 0.66 | 0.936977 |
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Target: 5'- gUGAGG-CGAGGGGGGcugccgaauguccUGgGGGgGACa -3' miRNA: 3'- uGCUCCuGCUUCUCCU-------------ACgCCUgCUG- -5' |
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| 5776 | 5' | -55.2 | NC_001806.1 | + | 99637 | 0.66 | 0.937461 |
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Target: 5'- cAUGGGGGCGguGGcGGGccugGCGGGCaGGCa -3' miRNA: 3'- -UGCUCCUGCuuCU-CCUa---CGCCUG-CUG- -5' |
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| 5776 | 5' | -55.2 | NC_001806.1 | + | 71915 | 0.66 | 0.937461 |
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Target: 5'- uCGAGGGauguuugguCGAGGGGGGcgaGUGGACGcGCg -3' miRNA: 3'- uGCUCCU---------GCUUCUCCUa--CGCCUGC-UG- -5' |
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| 5776 | 5' | -55.2 | NC_001806.1 | + | 25946 | 0.66 | 0.937461 |
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Target: 5'- gUGGGGGCGggGccgcGGGA-GCGGGgGGa -3' miRNA: 3'- uGCUCCUGCuuC----UCCUaCGCCUgCUg -5' |
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| 5776 | 5' | -55.2 | NC_001806.1 | + | 69126 | 0.66 | 0.937461 |
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Target: 5'- cCGGGGACGcuaauGGcgcgcGUGCGGACgGACg -3' miRNA: 3'- uGCUCCUGCuucu-CC-----UACGCCUG-CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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