miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5776 5' -55.2 NC_001806.1 + 29182 0.72 0.638685
Target:  5'- uGCGGGGGCGcccccccucGAGAGGAcggGgGGAgCGACg -3'
miRNA:   3'- -UGCUCCUGC---------UUCUCCUa--CgCCU-GCUG- -5'
5776 5' -55.2 NC_001806.1 + 29445 0.67 0.897856
Target:  5'- -gGAGGcCGAGGAGGccgucaggGCGGgcACGGCc -3'
miRNA:   3'- ugCUCCuGCUUCUCCua------CGCC--UGCUG- -5'
5776 5' -55.2 NC_001806.1 + 29596 0.74 0.517618
Target:  5'- gACGAccuGGACGAcgguGAGGcgGgGGGCGGCa -3'
miRNA:   3'- -UGCU---CCUGCUu---CUCCuaCgCCUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 29647 0.72 0.670348
Target:  5'- -gGAGGAgGAGGGGGGgggagggaggaauagGCGGGCGGg -3'
miRNA:   3'- ugCUCCUgCUUCUCCUa--------------CGCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 34004 0.66 0.921915
Target:  5'- gGCGGGGGCGugggcGGGGGUGCucgucGAuCGACc -3'
miRNA:   3'- -UGCUCCUGCuu---CUCCUACGc----CU-GCUG- -5'
5776 5' -55.2 NC_001806.1 + 34073 0.69 0.822226
Target:  5'- gGCGAGGAgacUGggGugGGGGUGuCGGugGGu -3'
miRNA:   3'- -UGCUCCU---GCuuC--UCCUAC-GCCugCUg -5'
5776 5' -55.2 NC_001806.1 + 34287 0.68 0.854938
Target:  5'- cCGGGGGCGGgauGGGGuuuagcgGCGGGgGGCg -3'
miRNA:   3'- uGCUCCUGCUu--CUCCua-----CGCCUgCUG- -5'
5776 5' -55.2 NC_001806.1 + 34384 0.67 0.88443
Target:  5'- cCGAGGugGGugGGuGGGcgGCGGugGcCg -3'
miRNA:   3'- uGCUCCugCU--UC-UCCuaCGCCugCuG- -5'
5776 5' -55.2 NC_001806.1 + 34458 0.8 0.277694
Target:  5'- aACGAGGAgGAGGAGGAgaagGCGGGgGGg -3'
miRNA:   3'- -UGCUCCUgCUUCUCCUa---CGCCUgCUg -5'
5776 5' -55.2 NC_001806.1 + 34774 0.68 0.87738
Target:  5'- gGCGGGGcgguuCGggGGGGGgggggGgGGGCGGg -3'
miRNA:   3'- -UGCUCCu----GCuuCUCCUa----CgCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 37790 0.69 0.838958
Target:  5'- gGCcGGGGCGcGGGGGuccGCGGGCGGg -3'
miRNA:   3'- -UGcUCCUGCuUCUCCua-CGCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 44388 0.68 0.870111
Target:  5'- cGCGuAGGaACGAccaGGAGGccGCGGGCGu- -3'
miRNA:   3'- -UGC-UCC-UGCU---UCUCCuaCGCCUGCug -5'
5776 5' -55.2 NC_001806.1 + 44510 0.66 0.927336
Target:  5'- uGCcGGGACGguGAccGGgcGaCGGACGACa -3'
miRNA:   3'- -UGcUCCUGCuuCU--CCuaC-GCCUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 45305 0.72 0.679495
Target:  5'- cGCGGGGAgccgccCGgcGAGGAggGCGGGCG-Cg -3'
miRNA:   3'- -UGCUCCU------GCuuCUCCUa-CGCCUGCuG- -5'
5776 5' -55.2 NC_001806.1 + 49220 0.76 0.424171
Target:  5'- cGCGGGGaugacgacaGCGAgcuagaggcucuGGAGGAgaugGCGGGCGACg -3'
miRNA:   3'- -UGCUCC---------UGCU------------UCUCCUa---CGCCUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 51092 0.72 0.679495
Target:  5'- gAUGGGaGACGAGGGGGccgccgcccUGCGGGCGcACg -3'
miRNA:   3'- -UGCUC-CUGCUUCUCCu--------ACGCCUGC-UG- -5'
5776 5' -55.2 NC_001806.1 + 51679 0.68 0.87738
Target:  5'- aGCGGccuGGACGuccccGAGGAccccGUGGGCGACu -3'
miRNA:   3'- -UGCU---CCUGCuu---CUCCUa---CGCCUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 51953 0.68 0.87738
Target:  5'- cCGGuGGGCGuccuGGAUGCuguGGACGACg -3'
miRNA:   3'- uGCU-CCUGCuucuCCUACG---CCUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 53105 0.69 0.804803
Target:  5'- aGCGAGGACGggGGGcGUGUcuACGAg -3'
miRNA:   3'- -UGCUCCUGCuuCUCcUACGccUGCUg -5'
5776 5' -55.2 NC_001806.1 + 57155 0.67 0.890585
Target:  5'- cGCGAGG--GGAGGGGGUGCGcGcauaaagcccagcACGGCg -3'
miRNA:   3'- -UGCUCCugCUUCUCCUACGC-C-------------UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.