miRNA display CGI


Results 61 - 80 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5776 5' -55.2 NC_001806.1 + 57811 0.74 0.517618
Target:  5'- -gGGGGACuggaucugcgGgcGGGGGUGCGGugGGCg -3'
miRNA:   3'- ugCUCCUG----------CuuCUCCUACGCCugCUG- -5'
5776 5' -55.2 NC_001806.1 + 59884 0.66 0.932518
Target:  5'- -gGAcGGACGAGGAGGccagugacGUGGACGcCu -3'
miRNA:   3'- ugCU-CCUGCUUCUCCua------CGCCUGCuG- -5'
5776 5' -55.2 NC_001806.1 + 62828 0.7 0.786754
Target:  5'- cCGAGaucuGCGccGAGGcgGCGGugGGCa -3'
miRNA:   3'- uGCUCc---UGCuuCUCCuaCGCCugCUG- -5'
5776 5' -55.2 NC_001806.1 + 64652 0.66 0.936977
Target:  5'- gUGAGG-CGAGGGGGGcugccgaauguccUGgGGGgGACa -3'
miRNA:   3'- uGCUCCuGCUUCUCCU-------------ACgCCUgCUG- -5'
5776 5' -55.2 NC_001806.1 + 65288 0.69 0.836494
Target:  5'- aGCGGGGAgGAGGAGGggGgcccccaagggccuCGGugGGg -3'
miRNA:   3'- -UGCUCCUgCUUCUCCuaC--------------GCCugCUg -5'
5776 5' -55.2 NC_001806.1 + 65705 0.72 0.66933
Target:  5'- cCGGGGcccgcgcuucgACgGGAGAGGAUGCGGcuggGCGGCu -3'
miRNA:   3'- uGCUCC-----------UG-CUUCUCCUACGCC----UGCUG- -5'
5776 5' -55.2 NC_001806.1 + 66228 0.66 0.927336
Target:  5'- uUGGGGGCGGAGcguuGUGUGGGCGGg -3'
miRNA:   3'- uGCUCCUGCUUCucc-UACGCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 69126 0.66 0.937461
Target:  5'- cCGGGGACGcuaauGGcgcgcGUGCGGACgGACg -3'
miRNA:   3'- uGCUCCUGCuucu-CC-----UACGCCUG-CUG- -5'
5776 5' -55.2 NC_001806.1 + 71405 0.67 0.897856
Target:  5'- uCGAGGACGAcGA-GAUGauccCGGAgGACa -3'
miRNA:   3'- uGCUCCUGCUuCUcCUAC----GCCUgCUG- -5'
5776 5' -55.2 NC_001806.1 + 71530 0.7 0.74906
Target:  5'- uGCGGgcGGGCGggGGGGGggGUGGAaGACc -3'
miRNA:   3'- -UGCU--CCUGCuuCUCCUa-CGCCUgCUG- -5'
5776 5' -55.2 NC_001806.1 + 71915 0.66 0.937461
Target:  5'- uCGAGGGauguuugguCGAGGGGGGcgaGUGGACGcGCg -3'
miRNA:   3'- uGCUCCU---------GCUUCUCCUa--CGCCUGC-UG- -5'
5776 5' -55.2 NC_001806.1 + 76377 0.76 0.460399
Target:  5'- aGCGAGGACGcgcuGGuGGcGUGCGuGGCGGCg -3'
miRNA:   3'- -UGCUCCUGCu---UCuCC-UACGC-CUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 77847 0.67 0.897856
Target:  5'- gGCGA-GAUGggGGgccucgauGGAUGCGG-CGGCc -3'
miRNA:   3'- -UGCUcCUGCuuCU--------CCUACGCCuGCUG- -5'
5776 5' -55.2 NC_001806.1 + 79044 0.7 0.76247
Target:  5'- aGCGAGGccacCGAGGAGcucccguuugugGCGGGCGGCg -3'
miRNA:   3'- -UGCUCCu---GCUUCUCcua---------CGCCUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 83265 0.78 0.326495
Target:  5'- gGCGGGcGACGGAGGGGGUuCGGGCGGg -3'
miRNA:   3'- -UGCUC-CUGCUUCUCCUAcGCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 83804 0.85 0.131664
Target:  5'- cCGGGGGCGAGGAGGggGCGGGguCGGCg -3'
miRNA:   3'- uGCUCCUGCUUCUCCuaCGCCU--GCUG- -5'
5776 5' -55.2 NC_001806.1 + 88137 0.69 0.804803
Target:  5'- -gGAGGACGugcuccaGGGcgGUGGugGACa -3'
miRNA:   3'- ugCUCCUGCuuc----UCCuaCGCCugCUG- -5'
5776 5' -55.2 NC_001806.1 + 89775 0.72 0.648916
Target:  5'- cGCGcGGGGCGuGGGAGGGgcugggGCGGAcCGGCa -3'
miRNA:   3'- -UGC-UCCUGC-UUCUCCUa-----CGCCU-GCUG- -5'
5776 5' -55.2 NC_001806.1 + 95294 0.78 0.349277
Target:  5'- cAUGGGGGCGggGGGcGcgGCGGACG-Cg -3'
miRNA:   3'- -UGCUCCUGCuuCUC-CuaCGCCUGCuG- -5'
5776 5' -55.2 NC_001806.1 + 95409 0.71 0.699701
Target:  5'- gGCGAGGACGAAGAccgucgccgcGGGccCGGGgGGCa -3'
miRNA:   3'- -UGCUCCUGCUUCU----------CCUacGCCUgCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.