miRNA display CGI


Results 81 - 100 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5776 5' -55.2 NC_001806.1 + 98849 0.77 0.381375
Target:  5'- -gGAGGGCGAGGAGG--GCGG-CGACu -3'
miRNA:   3'- ugCUCCUGCUUCUCCuaCGCCuGCUG- -5'
5776 5' -55.2 NC_001806.1 + 99637 0.66 0.937461
Target:  5'- cAUGGGGGCGguGGcGGGccugGCGGGCaGGCa -3'
miRNA:   3'- -UGCUCCUGCuuCU-CCUa---CGCCUG-CUG- -5'
5776 5' -55.2 NC_001806.1 + 103434 0.73 0.607994
Target:  5'- -gGGGGugGGAuGAGGggGCGcGAUGGCa -3'
miRNA:   3'- ugCUCCugCUU-CUCCuaCGC-CUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 119552 0.69 0.813597
Target:  5'- aGCGGGGGCGccauGGGGGcgGCuGACG-Ca -3'
miRNA:   3'- -UGCUCCUGCu---UCUCCuaCGcCUGCuG- -5'
5776 5' -55.2 NC_001806.1 + 120326 0.7 0.767206
Target:  5'- gACG-GGGCGGucGGGGGcgGCGGgucgucccgcucgGCGACg -3'
miRNA:   3'- -UGCuCCUGCU--UCUCCuaCGCC-------------UGCUG- -5'
5776 5' -55.2 NC_001806.1 + 127396 0.69 0.804803
Target:  5'- cCGGGGuuGAGGGGGGgggGgGGACGGu -3'
miRNA:   3'- uGCUCCugCUUCUCCUa--CgCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 133147 0.7 0.777517
Target:  5'- uGCGGGGGCGAuGGGGGUGCGuuCu-- -3'
miRNA:   3'- -UGCUCCUGCUuCUCCUACGCcuGcug -5'
5776 5' -55.2 NC_001806.1 + 137592 0.75 0.46971
Target:  5'- cCGGGGGCGAGGAGu-UGCGGaACGAg -3'
miRNA:   3'- uGCUCCUGCUUCUCcuACGCC-UGCUg -5'
5776 5' -55.2 NC_001806.1 + 140432 0.66 0.932518
Target:  5'- gUGAGGGuggcaUGggGGGGggGCGGuuacuCGGCc -3'
miRNA:   3'- uGCUCCU-----GCuuCUCCuaCGCCu----GCUG- -5'
5776 5' -55.2 NC_001806.1 + 141968 0.67 0.891257
Target:  5'- -gGAGGGuCGggGGGc--GCGGACGAg -3'
miRNA:   3'- ugCUCCU-GCuuCUCcuaCGCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 143115 0.68 0.87738
Target:  5'- cUGGGGGCGuggcugccggGAGGGGccGCGGAUGGg -3'
miRNA:   3'- uGCUCCUGC----------UUCUCCuaCGCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 143249 0.72 0.679495
Target:  5'- uGCGGGuugGggGGGGAUGUGGGCGGg -3'
miRNA:   3'- -UGCUCcugCuuCUCCUACGCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 143805 0.75 0.479117
Target:  5'- -aGGGGACGGagggAGGGGGUGaCGGGgGACg -3'
miRNA:   3'- ugCUCCUGCU----UCUCCUAC-GCCUgCUG- -5'
5776 5' -55.2 NC_001806.1 + 144050 0.68 0.854158
Target:  5'- gGCGAGGAacaacCGAggggaacGGGGGAUGgaaGGACGGg -3'
miRNA:   3'- -UGCUCCU-----GCU-------UCUCCUACg--CCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 145559 0.7 0.786754
Target:  5'- uGCGGGGGa-GGGGGGGUGUGGAaggaaaugcaCGGCg -3'
miRNA:   3'- -UGCUCCUgcUUCUCCUACGCCU----------GCUG- -5'
5776 5' -55.2 NC_001806.1 + 145626 0.7 0.786754
Target:  5'- aGCGAGGAUacGGAGGAgugGCGGGUGcCg -3'
miRNA:   3'- -UGCUCCUGcuUCUCCUa--CGCCUGCuG- -5'
5776 5' -55.2 NC_001806.1 + 147180 0.67 0.891257
Target:  5'- cCGAGGaggcggaaGCgGAGGAGGAcGCGGccccgGCGGCg -3'
miRNA:   3'- uGCUCC--------UG-CUUCUCCUaCGCC-----UGCUG- -5'
5776 5' -55.2 NC_001806.1 + 147265 0.67 0.891257
Target:  5'- -aGAGGAgGAAGAGGcgGaggccgccgaGGACGuCa -3'
miRNA:   3'- ugCUCCUgCUUCUCCuaCg---------CCUGCuG- -5'
5776 5' -55.2 NC_001806.1 + 147475 0.75 0.488615
Target:  5'- -aGAGGcgGCGGAGGGGA-GCGGgGCGGCg -3'
miRNA:   3'- ugCUCC--UGCUUCUCCUaCGCC-UGCUG- -5'
5776 5' -55.2 NC_001806.1 + 147696 0.67 0.897856
Target:  5'- cGCGGGGGCGGgccccGGAGGcgGCGcuCGcACg -3'
miRNA:   3'- -UGCUCCUGCU-----UCUCCuaCGCcuGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.