miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5776 5' -55.2 NC_001806.1 + 140432 0.66 0.932518
Target:  5'- gUGAGGGuggcaUGggGGGGggGCGGuuacuCGGCc -3'
miRNA:   3'- uGCUCCU-----GCuuCUCCuaCGCCu----GCUG- -5'
5776 5' -55.2 NC_001806.1 + 137592 0.75 0.46971
Target:  5'- cCGGGGGCGAGGAGu-UGCGGaACGAg -3'
miRNA:   3'- uGCUCCUGCUUCUCcuACGCC-UGCUg -5'
5776 5' -55.2 NC_001806.1 + 133147 0.7 0.777517
Target:  5'- uGCGGGGGCGAuGGGGGUGCGuuCu-- -3'
miRNA:   3'- -UGCUCCUGCUuCUCCUACGCcuGcug -5'
5776 5' -55.2 NC_001806.1 + 127396 0.69 0.804803
Target:  5'- cCGGGGuuGAGGGGGGgggGgGGACGGu -3'
miRNA:   3'- uGCUCCugCUUCUCCUa--CgCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 120326 0.7 0.767206
Target:  5'- gACG-GGGCGGucGGGGGcgGCGGgucgucccgcucgGCGACg -3'
miRNA:   3'- -UGCuCCUGCU--UCUCCuaCGCC-------------UGCUG- -5'
5776 5' -55.2 NC_001806.1 + 119552 0.69 0.813597
Target:  5'- aGCGGGGGCGccauGGGGGcgGCuGACG-Ca -3'
miRNA:   3'- -UGCUCCUGCu---UCUCCuaCGcCUGCuG- -5'
5776 5' -55.2 NC_001806.1 + 103434 0.73 0.607994
Target:  5'- -gGGGGugGGAuGAGGggGCGcGAUGGCa -3'
miRNA:   3'- ugCUCCugCUU-CUCCuaCGC-CUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 99637 0.66 0.937461
Target:  5'- cAUGGGGGCGguGGcGGGccugGCGGGCaGGCa -3'
miRNA:   3'- -UGCUCCUGCuuCU-CCUa---CGCCUG-CUG- -5'
5776 5' -55.2 NC_001806.1 + 98849 0.77 0.381375
Target:  5'- -gGAGGGCGAGGAGG--GCGG-CGACu -3'
miRNA:   3'- ugCUCCUGCUUCUCCuaCGCCuGCUG- -5'
5776 5' -55.2 NC_001806.1 + 95409 0.71 0.699701
Target:  5'- gGCGAGGACGAAGAccgucgccgcGGGccCGGGgGGCa -3'
miRNA:   3'- -UGCUCCUGCUUCU----------CCUacGCCUgCUG- -5'
5776 5' -55.2 NC_001806.1 + 95294 0.78 0.349277
Target:  5'- cAUGGGGGCGggGGGcGcgGCGGACG-Cg -3'
miRNA:   3'- -UGCUCCUGCuuCUC-CuaCGCCUGCuG- -5'
5776 5' -55.2 NC_001806.1 + 89775 0.72 0.648916
Target:  5'- cGCGcGGGGCGuGGGAGGGgcugggGCGGAcCGGCa -3'
miRNA:   3'- -UGC-UCCUGC-UUCUCCUa-----CGCCU-GCUG- -5'
5776 5' -55.2 NC_001806.1 + 88137 0.69 0.804803
Target:  5'- -gGAGGACGugcuccaGGGcgGUGGugGACa -3'
miRNA:   3'- ugCUCCUGCuuc----UCCuaCGCCugCUG- -5'
5776 5' -55.2 NC_001806.1 + 83804 0.85 0.131664
Target:  5'- cCGGGGGCGAGGAGGggGCGGGguCGGCg -3'
miRNA:   3'- uGCUCCUGCUUCUCCuaCGCCU--GCUG- -5'
5776 5' -55.2 NC_001806.1 + 83265 0.78 0.326495
Target:  5'- gGCGGGcGACGGAGGGGGUuCGGGCGGg -3'
miRNA:   3'- -UGCUC-CUGCUUCUCCUAcGCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 79044 0.7 0.76247
Target:  5'- aGCGAGGccacCGAGGAGcucccguuugugGCGGGCGGCg -3'
miRNA:   3'- -UGCUCCu---GCUUCUCcua---------CGCCUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 77847 0.67 0.897856
Target:  5'- gGCGA-GAUGggGGgccucgauGGAUGCGG-CGGCc -3'
miRNA:   3'- -UGCUcCUGCuuCU--------CCUACGCCuGCUG- -5'
5776 5' -55.2 NC_001806.1 + 76377 0.76 0.460399
Target:  5'- aGCGAGGACGcgcuGGuGGcGUGCGuGGCGGCg -3'
miRNA:   3'- -UGCUCCUGCu---UCuCC-UACGC-CUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 71915 0.66 0.937461
Target:  5'- uCGAGGGauguuugguCGAGGGGGGcgaGUGGACGcGCg -3'
miRNA:   3'- uGCUCCU---------GCUUCUCCUa--CGCCUGC-UG- -5'
5776 5' -55.2 NC_001806.1 + 71530 0.7 0.74906
Target:  5'- uGCGGgcGGGCGggGGGGGggGUGGAaGACc -3'
miRNA:   3'- -UGCU--CCUGCuuCUCCUa-CGCCUgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.