miRNA display CGI


Results 41 - 60 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5776 5' -55.2 NC_001806.1 + 71405 0.67 0.897856
Target:  5'- uCGAGGACGAcGA-GAUGauccCGGAgGACa -3'
miRNA:   3'- uGCUCCUGCUuCUcCUAC----GCCUgCUG- -5'
5776 5' -55.2 NC_001806.1 + 69126 0.66 0.937461
Target:  5'- cCGGGGACGcuaauGGcgcgcGUGCGGACgGACg -3'
miRNA:   3'- uGCUCCUGCuucu-CC-----UACGCCUG-CUG- -5'
5776 5' -55.2 NC_001806.1 + 66228 0.66 0.927336
Target:  5'- uUGGGGGCGGAGcguuGUGUGGGCGGg -3'
miRNA:   3'- uGCUCCUGCUUCucc-UACGCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 65705 0.72 0.66933
Target:  5'- cCGGGGcccgcgcuucgACgGGAGAGGAUGCGGcuggGCGGCu -3'
miRNA:   3'- uGCUCC-----------UG-CUUCUCCUACGCC----UGCUG- -5'
5776 5' -55.2 NC_001806.1 + 65288 0.69 0.836494
Target:  5'- aGCGGGGAgGAGGAGGggGgcccccaagggccuCGGugGGg -3'
miRNA:   3'- -UGCUCCUgCUUCUCCuaC--------------GCCugCUg -5'
5776 5' -55.2 NC_001806.1 + 64652 0.66 0.936977
Target:  5'- gUGAGG-CGAGGGGGGcugccgaauguccUGgGGGgGACa -3'
miRNA:   3'- uGCUCCuGCUUCUCCU-------------ACgCCUgCUG- -5'
5776 5' -55.2 NC_001806.1 + 62828 0.7 0.786754
Target:  5'- cCGAGaucuGCGccGAGGcgGCGGugGGCa -3'
miRNA:   3'- uGCUCc---UGCuuCUCCuaCGCCugCUG- -5'
5776 5' -55.2 NC_001806.1 + 59884 0.66 0.932518
Target:  5'- -gGAcGGACGAGGAGGccagugacGUGGACGcCu -3'
miRNA:   3'- ugCU-CCUGCUUCUCCua------CGCCUGCuG- -5'
5776 5' -55.2 NC_001806.1 + 57811 0.74 0.517618
Target:  5'- -gGGGGACuggaucugcgGgcGGGGGUGCGGugGGCg -3'
miRNA:   3'- ugCUCCUG----------CuuCUCCUACGCCugCUG- -5'
5776 5' -55.2 NC_001806.1 + 57155 0.67 0.890585
Target:  5'- cGCGAGG--GGAGGGGGUGCGcGcauaaagcccagcACGGCg -3'
miRNA:   3'- -UGCUCCugCUUCUCCUACGC-C-------------UGCUG- -5'
5776 5' -55.2 NC_001806.1 + 53105 0.69 0.804803
Target:  5'- aGCGAGGACGggGGGcGUGUcuACGAg -3'
miRNA:   3'- -UGCUCCUGCuuCUCcUACGccUGCUg -5'
5776 5' -55.2 NC_001806.1 + 51953 0.68 0.87738
Target:  5'- cCGGuGGGCGuccuGGAUGCuguGGACGACg -3'
miRNA:   3'- uGCU-CCUGCuucuCCUACG---CCUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 51679 0.68 0.87738
Target:  5'- aGCGGccuGGACGuccccGAGGAccccGUGGGCGACu -3'
miRNA:   3'- -UGCU---CCUGCuu---CUCCUa---CGCCUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 51092 0.72 0.679495
Target:  5'- gAUGGGaGACGAGGGGGccgccgcccUGCGGGCGcACg -3'
miRNA:   3'- -UGCUC-CUGCUUCUCCu--------ACGCCUGC-UG- -5'
5776 5' -55.2 NC_001806.1 + 49220 0.76 0.424171
Target:  5'- cGCGGGGaugacgacaGCGAgcuagaggcucuGGAGGAgaugGCGGGCGACg -3'
miRNA:   3'- -UGCUCC---------UGCU------------UCUCCUa---CGCCUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 45305 0.72 0.679495
Target:  5'- cGCGGGGAgccgccCGgcGAGGAggGCGGGCG-Cg -3'
miRNA:   3'- -UGCUCCU------GCuuCUCCUa-CGCCUGCuG- -5'
5776 5' -55.2 NC_001806.1 + 44510 0.66 0.927336
Target:  5'- uGCcGGGACGguGAccGGgcGaCGGACGACa -3'
miRNA:   3'- -UGcUCCUGCuuCU--CCuaC-GCCUGCUG- -5'
5776 5' -55.2 NC_001806.1 + 44388 0.68 0.870111
Target:  5'- cGCGuAGGaACGAccaGGAGGccGCGGGCGu- -3'
miRNA:   3'- -UGC-UCC-UGCU---UCUCCuaCGCCUGCug -5'
5776 5' -55.2 NC_001806.1 + 37790 0.69 0.838958
Target:  5'- gGCcGGGGCGcGGGGGuccGCGGGCGGg -3'
miRNA:   3'- -UGcUCCUGCuUCUCCua-CGCCUGCUg -5'
5776 5' -55.2 NC_001806.1 + 34774 0.68 0.87738
Target:  5'- gGCGGGGcgguuCGggGGGGGgggggGgGGGCGGg -3'
miRNA:   3'- -UGCUCCu----GCuuCUCCUa----CgCCUGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.