miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 95650 0.66 0.585518
Target:  5'- -aCGGCUuugCGGcgcgcgcgcgcuucuGCGCCCugACGGCgggCGCg -3'
miRNA:   3'- ggGUCGA---GCC---------------CGCGGGugUGCCG---GCG- -5'
5777 5' -64.1 NC_001806.1 + 6070 0.66 0.591248
Target:  5'- gCCGGCccCGGGggcggGCCCGgGCGGCgGg -3'
miRNA:   3'- gGGUCGa-GCCCg----CGGGUgUGCCGgCg -5'
5777 5' -64.1 NC_001806.1 + 41561 0.66 0.591248
Target:  5'- aUCCGGUagaCGGGCaggggaGUCUGCACcGCCGCa -3'
miRNA:   3'- -GGGUCGa--GCCCG------CGGGUGUGcCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 103041 0.66 0.591248
Target:  5'- cUCCAGCgccuccaGGGCGCCUgcgaucucguGCACGuuCCGUu -3'
miRNA:   3'- -GGGUCGag-----CCCGCGGG----------UGUGCc-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 21539 0.66 0.591248
Target:  5'- gCCCcGCUaCGcGGCGCguauccggaCCcCACGGaCCGCc -3'
miRNA:   3'- -GGGuCGA-GC-CCGCG---------GGuGUGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 118593 0.66 0.581704
Target:  5'- cCCgCGGaCUCGGGgGaCCCGCAUcGCCu- -3'
miRNA:   3'- -GG-GUC-GAGCCCgC-GGGUGUGcCGGcg -5'
5777 5' -64.1 NC_001806.1 + 113646 0.66 0.581704
Target:  5'- aCCUAcCUCGGGgGagaCCuucccgaggaguGCAUGGCCGUg -3'
miRNA:   3'- -GGGUcGAGCCCgCg--GG------------UGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 4938 0.66 0.571242
Target:  5'- gCCGGCgUC-GGUGCCCGcCGCGGgggcccucccgucCCGCc -3'
miRNA:   3'- gGGUCG-AGcCCGCGGGU-GUGCC-------------GGCG- -5'
5777 5' -64.1 NC_001806.1 + 52030 0.66 0.571242
Target:  5'- uCCC-GCUCGGcggcagcccggagGCGCCCGCggaaACGuuCGCg -3'
miRNA:   3'- -GGGuCGAGCC-------------CGCGGGUG----UGCcgGCG- -5'
5777 5' -64.1 NC_001806.1 + 52523 0.66 0.572191
Target:  5'- -gCGGCUCGuGGCGUCUcgccggacgACGUGGuCCGCg -3'
miRNA:   3'- ggGUCGAGC-CCGCGGG---------UGUGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 96464 0.66 0.572191
Target:  5'- uCCgAGUUCccccGGCacGCCUgggguCGCGGCCGCg -3'
miRNA:   3'- -GGgUCGAGc---CCG--CGGGu----GUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 106532 0.66 0.572191
Target:  5'- gCUgguGCUCGGGUGCgaugCCGCGCuGGUgCGCg -3'
miRNA:   3'- gGGu--CGAGCCCGCG----GGUGUG-CCG-GCG- -5'
5777 5' -64.1 NC_001806.1 + 2667 0.66 0.572191
Target:  5'- -gCGGCcgCGGGCGCCgCcgugugGCugGGCCcCg -3'
miRNA:   3'- ggGUCGa-GCCCGCGG-G------UGugCCGGcG- -5'
5777 5' -64.1 NC_001806.1 + 75499 0.66 0.572191
Target:  5'- aCCGGCgcgCGGGaaaGCCuCGCG-GGCCa- -3'
miRNA:   3'- gGGUCGa--GCCCg--CGG-GUGUgCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 79467 0.66 0.572191
Target:  5'- uCCCAGUgugcacCGcGGC-CCC-CugGGCCGg -3'
miRNA:   3'- -GGGUCGa-----GC-CCGcGGGuGugCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 92339 0.66 0.572191
Target:  5'- cCCCAGCcuaaCGGcCGgCCAgACGGCCc- -3'
miRNA:   3'- -GGGUCGa---GCCcGCgGGUgUGCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 93978 0.66 0.572191
Target:  5'- cUCCGGCcgCGguacagaucGGCGCCgCGagAUGGCCGCc -3'
miRNA:   3'- -GGGUCGa-GC---------CCGCGG-GUg-UGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 106898 0.66 0.572191
Target:  5'- cCCCcuCUCuucuGGCGCCUaACGgGGCUGCu -3'
miRNA:   3'- -GGGucGAGc---CCGCGGG-UGUgCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 56532 0.66 0.580751
Target:  5'- gCCCGGCguucccCGGGCauguucucgcaccGUCUugACGGCaagCGCg -3'
miRNA:   3'- -GGGUCGa-----GCCCG-------------CGGGugUGCCG---GCG- -5'
5777 5' -64.1 NC_001806.1 + 38408 0.66 0.581704
Target:  5'- gCCGGCUCGGGgggguccuCGUCCAgAUcGCUGUc -3'
miRNA:   3'- gGGUCGAGCCC--------GCGGGUgUGcCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.