miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 92339 0.66 0.572191
Target:  5'- cCCCAGCcuaaCGGcCGgCCAgACGGCCc- -3'
miRNA:   3'- -GGGUCGa---GCCcGCgGGUgUGCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 79467 0.66 0.572191
Target:  5'- uCCCAGUgugcacCGcGGC-CCC-CugGGCCGg -3'
miRNA:   3'- -GGGUCGa-----GC-CCGcGGGuGugCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 75499 0.66 0.572191
Target:  5'- aCCGGCgcgCGGGaaaGCCuCGCG-GGCCa- -3'
miRNA:   3'- gGGUCGa--GCCCg--CGG-GUGUgCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 22200 0.67 0.518837
Target:  5'- gCCCgAGCUgGGcgacgccGCGCagcaguacgcccugaUCACGCGGCUGCu -3'
miRNA:   3'- -GGG-UCGAgCC-------CGCG---------------GGUGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 108524 0.67 0.51608
Target:  5'- aUCCAGgUacccGGCgGCCCGCGugcggcUGGCCGCg -3'
miRNA:   3'- -GGGUCgAgc--CCG-CGGGUGU------GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 82533 0.67 0.51608
Target:  5'- gCCCAGUccCGccauGGCGCCCGCgAUGGgaGCg -3'
miRNA:   3'- -GGGUCGa-GC----CCGCGGGUG-UGCCggCG- -5'
5777 5' -64.1 NC_001806.1 + 79740 0.67 0.51608
Target:  5'- aCCCAGgguuggCGGcCGCCUgcccuccccgACACGGUCGCc -3'
miRNA:   3'- -GGGUCga----GCCcGCGGG----------UGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 42770 0.67 0.51608
Target:  5'- uCCCGuGCgccaGGGCGUCCuguaGCGCGGCgaCGUc -3'
miRNA:   3'- -GGGU-CGag--CCCGCGGG----UGUGCCG--GCG- -5'
5777 5' -64.1 NC_001806.1 + 21935 0.67 0.51608
Target:  5'- gCCGGCcgcgacgccaCGGGC-CCUuCACGGCCGg -3'
miRNA:   3'- gGGUCGa---------GCCCGcGGGuGUGCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 21856 0.67 0.51608
Target:  5'- gCCCaAGCccCGGGCGgcggcgaggaCCCcCGCGGCCuccGCg -3'
miRNA:   3'- -GGG-UCGa-GCCCGC----------GGGuGUGCCGG---CG- -5'
5777 5' -64.1 NC_001806.1 + 2820 0.67 0.519757
Target:  5'- gCgGGCUCGGGC-CCCgggggcguggaggggGgCGCGGgCGCg -3'
miRNA:   3'- gGgUCGAGCCCGcGGG---------------U-GUGCCgGCG- -5'
5777 5' -64.1 NC_001806.1 + 22887 0.67 0.522522
Target:  5'- gCUGGC-CGGG-GCCCGgcccgccagcccccCGCGGCCGg -3'
miRNA:   3'- gGGUCGaGCCCgCGGGU--------------GUGCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 6128 0.67 0.522522
Target:  5'- gCCCGGCgcgacCGacgcccgcagacGGCGCCgGCcacgaacgacgggaGCGGCUGCg -3'
miRNA:   3'- -GGGUCGa----GC------------CCGCGGgUG--------------UGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 37880 0.67 0.525293
Target:  5'- uCCgGGUgggUCGGGCuGCUCACu--GCCGCg -3'
miRNA:   3'- -GGgUCG---AGCCCG-CGGGUGugcCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 109931 0.67 0.525293
Target:  5'- aCUUGGCaaucucccCGGGCuGCgaggCACACGGCCGCc -3'
miRNA:   3'- -GGGUCGa-------GCCCG-CGg---GUGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 135571 0.67 0.525293
Target:  5'- -aCGGaCUCGGcCGCCagguCGGCCGCg -3'
miRNA:   3'- ggGUC-GAGCCcGCGGguguGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 11464 0.67 0.534567
Target:  5'- gCUCGGCUcCGaGGCGggC-CAUGGCCGCu -3'
miRNA:   3'- -GGGUCGA-GC-CCGCggGuGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 22118 0.67 0.534567
Target:  5'- gCCCGGgcCUCugggGGGCGCCCGagGCGGaggaggCGCg -3'
miRNA:   3'- -GGGUC--GAG----CCCGCGGGUg-UGCCg-----GCG- -5'
5777 5' -64.1 NC_001806.1 + 23475 0.67 0.534567
Target:  5'- nCCgCGGCgCaGGCccGCCCGCGCcccguGGCCGUg -3'
miRNA:   3'- -GG-GUCGaGcCCG--CGGGUGUG-----CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 75242 0.67 0.51608
Target:  5'- uCCUGGUcgacgCGGuGacgGCCCuggGCGCGGCCGCc -3'
miRNA:   3'- -GGGUCGa----GCC-Cg--CGGG---UGUGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.