Results 81 - 100 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5777 | 5' | -64.1 | NC_001806.1 | + | 26414 | 0.67 | 0.497855 |
Target: 5'- cCCCGGC-CGcccGgGCCCACGgGcGCCGUc -3' miRNA: 3'- -GGGUCGaGCc--CgCGGGUGUgC-CGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 151042 | 0.67 | 0.506932 |
Target: 5'- aCCCGGacgUgGGGCGagaagcgcaCCCGCGCgggGGUCGCg -3' miRNA: 3'- -GGGUCg--AgCCCGC---------GGGUGUG---CCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 19350 | 0.67 | 0.51608 |
Target: 5'- cCCCaAGcCUCcgGGGgGCCC-UACGGCCa- -3' miRNA: 3'- -GGG-UC-GAG--CCCgCGGGuGUGCCGGcg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 23475 | 0.67 | 0.534567 |
Target: 5'- nCCgCGGCgCaGGCccGCCCGCGCcccguGGCCGUg -3' miRNA: 3'- -GG-GUCGaGcCCG--CGGGUGUG-----CCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 22118 | 0.67 | 0.534567 |
Target: 5'- gCCCGGgcCUCugggGGGCGCCCGagGCGGaggaggCGCg -3' miRNA: 3'- -GGGUC--GAG----CCCGCGGGUg-UGCCg-----GCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 11464 | 0.67 | 0.534567 |
Target: 5'- gCUCGGCUcCGaGGCGggC-CAUGGCCGCu -3' miRNA: 3'- -GGGUCGA-GC-CCGCggGuGUGCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 135571 | 0.67 | 0.525293 |
Target: 5'- -aCGGaCUCGGcCGCCagguCGGCCGCg -3' miRNA: 3'- ggGUC-GAGCCcGCGGguguGCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 109931 | 0.67 | 0.525293 |
Target: 5'- aCUUGGCaaucucccCGGGCuGCgaggCACACGGCCGCc -3' miRNA: 3'- -GGGUCGa-------GCCCG-CGg---GUGUGCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 37880 | 0.67 | 0.525293 |
Target: 5'- uCCgGGUgggUCGGGCuGCUCACu--GCCGCg -3' miRNA: 3'- -GGgUCG---AGCCCG-CGGGUGugcCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 6128 | 0.67 | 0.522522 |
Target: 5'- gCCCGGCgcgacCGacgcccgcagacGGCGCCgGCcacgaacgacgggaGCGGCUGCg -3' miRNA: 3'- -GGGUCGa----GC------------CCGCGGgUG--------------UGCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 22887 | 0.67 | 0.522522 |
Target: 5'- gCUGGC-CGGG-GCCCGgcccgccagcccccCGCGGCCGg -3' miRNA: 3'- gGGUCGaGCCCgCGGGU--------------GUGCCGGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 2820 | 0.67 | 0.519757 |
Target: 5'- gCgGGCUCGGGC-CCCgggggcguggaggggGgCGCGGgCGCg -3' miRNA: 3'- gGgUCGAGCCCGcGGG---------------U-GUGCCgGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 22200 | 0.67 | 0.518837 |
Target: 5'- gCCCgAGCUgGGcgacgccGCGCagcaguacgcccugaUCACGCGGCUGCu -3' miRNA: 3'- -GGG-UCGAgCC-------CGCG---------------GGUGUGCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 108524 | 0.67 | 0.51608 |
Target: 5'- aUCCAGgUacccGGCgGCCCGCGugcggcUGGCCGCg -3' miRNA: 3'- -GGGUCgAgc--CCG-CGGGUGU------GCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 82533 | 0.67 | 0.51608 |
Target: 5'- gCCCAGUccCGccauGGCGCCCGCgAUGGgaGCg -3' miRNA: 3'- -GGGUCGa-GC----CCGCGGGUG-UGCCggCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 79740 | 0.67 | 0.51608 |
Target: 5'- aCCCAGgguuggCGGcCGCCUgcccuccccgACACGGUCGCc -3' miRNA: 3'- -GGGUCga----GCCcGCGGG----------UGUGCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 42770 | 0.67 | 0.51608 |
Target: 5'- uCCCGuGCgccaGGGCGUCCuguaGCGCGGCgaCGUc -3' miRNA: 3'- -GGGU-CGag--CCCGCGGG----UGUGCCG--GCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 21935 | 0.67 | 0.51608 |
Target: 5'- gCCGGCcgcgacgccaCGGGC-CCUuCACGGCCGg -3' miRNA: 3'- gGGUCGa---------GCCCGcGGGuGUGCCGGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 21856 | 0.67 | 0.51608 |
Target: 5'- gCCCaAGCccCGGGCGgcggcgaggaCCCcCGCGGCCuccGCg -3' miRNA: 3'- -GGG-UCGa-GCCCGC----------GGGuGUGCCGG---CG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 75242 | 0.67 | 0.51608 |
Target: 5'- uCCUGGUcgacgCGGuGacgGCCCuggGCGCGGCCGCc -3' miRNA: 3'- -GGGUCGa----GCC-Cg--CGGG---UGUGCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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