miRNA display CGI


Results 121 - 140 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 65466 0.68 0.44505
Target:  5'- cCCCGGgUCcuggGGGCGCCCGCGCaccacgucuCCGUc -3'
miRNA:   3'- -GGGUCgAG----CCCGCGGGUGUGcc-------GGCG- -5'
5777 5' -64.1 NC_001806.1 + 20164 0.68 0.44505
Target:  5'- cCCCGccGCcCGGGCccGCCCcCGgGGCCGg -3'
miRNA:   3'- -GGGU--CGaGCCCG--CGGGuGUgCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 131864 0.68 0.44505
Target:  5'- gUCCAgGCcgUCGuGGCGgCCGCcCGcGCCGCg -3'
miRNA:   3'- -GGGU-CG--AGC-CCGCgGGUGuGC-CGGCG- -5'
5777 5' -64.1 NC_001806.1 + 10723 0.68 0.462314
Target:  5'- gCCAGCgggacCGGaGCGCgCAUGCacGCCGCa -3'
miRNA:   3'- gGGUCGa----GCC-CGCGgGUGUGc-CGGCG- -5'
5777 5' -64.1 NC_001806.1 + 57117 0.68 0.462314
Target:  5'- gCCAGUUUGagccaGGCGUauauCCGCGCggugGGCCGCg -3'
miRNA:   3'- gGGUCGAGC-----CCGCG----GGUGUG----CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 100733 0.68 0.479923
Target:  5'- cUCCAcGC-CGGGCGCCCAggUGCGcCCGg -3'
miRNA:   3'- -GGGU-CGaGCCCGCGGGU--GUGCcGGCg -5'
5777 5' -64.1 NC_001806.1 + 92934 0.68 0.479923
Target:  5'- gCCUggaGGC-CGGG-GCCCGCGCGcugauggacGCCGUg -3'
miRNA:   3'- -GGG---UCGaGCCCgCGGGUGUGC---------CGGCG- -5'
5777 5' -64.1 NC_001806.1 + 60453 0.68 0.477261
Target:  5'- aCCAGCUCGcGCuccacggaaaccagGCCCccucugccGC-CGGCCGCc -3'
miRNA:   3'- gGGUCGAGCcCG--------------CGGG--------UGuGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 109863 0.68 0.477261
Target:  5'- --gAGCUCGcuucguacauaguuGGCGaCCACGCGGUCGUc -3'
miRNA:   3'- gggUCGAGC--------------CCGCgGGUGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 106690 0.68 0.471077
Target:  5'- cCCCgggGGCUcuuccCGGGCcCCCGgGCGGCCc- -3'
miRNA:   3'- -GGG---UCGA-----GCCCGcGGGUgUGCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 50666 0.68 0.471077
Target:  5'- aCCGGCgccgggacgaCGcGGCGgCCACGCgcgccauucuGGCCGCc -3'
miRNA:   3'- gGGUCGa---------GC-CCGCgGGUGUG----------CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 27335 0.68 0.471077
Target:  5'- gCCCGGCccaUUGGGCgggaguuaccGCCCAauggGCcgGGCCGCc -3'
miRNA:   3'- -GGGUCG---AGCCCG----------CGGGUg---UG--CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 24634 0.68 0.471077
Target:  5'- --gGGCcUGGGCGCgCCGCuGCGGcCCGUg -3'
miRNA:   3'- gggUCGaGCCCGCG-GGUG-UGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 122779 0.68 0.471077
Target:  5'- aCCAaCUCGGGgGCCaggaauuccaGCuuGGCCGUg -3'
miRNA:   3'- gGGUcGAGCCCgCGGg---------UGugCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 105678 0.68 0.471077
Target:  5'- cCCCaAGUUCGGGUGaaggCC-CAgGGCuCGCa -3'
miRNA:   3'- -GGG-UCGAGCCCGCg---GGuGUgCCG-GCG- -5'
5777 5' -64.1 NC_001806.1 + 100104 0.68 0.471077
Target:  5'- cCCgCGGC-CGGcugacCGCCCGCcugGCGGuCCGCg -3'
miRNA:   3'- -GG-GUCGaGCCc----GCGGGUG---UGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 32960 0.68 0.471077
Target:  5'- cCCgGGC-CGGG-GCCCcUugGGuCCGCc -3'
miRNA:   3'- -GGgUCGaGCCCgCGGGuGugCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 47203 0.68 0.471077
Target:  5'- gCCCGGC-CGGGgGUCCcaaaaACAcccCGGCgGCc -3'
miRNA:   3'- -GGGUCGaGCCCgCGGG-----UGU---GCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 112676 0.68 0.462314
Target:  5'- aCgAGCUCGaGaGCGCCCcccagacgacGCGCGuGCgCGCg -3'
miRNA:   3'- gGgUCGAGC-C-CGCGGG----------UGUGC-CG-GCG- -5'
5777 5' -64.1 NC_001806.1 + 89580 0.68 0.462314
Target:  5'- gCCGGC-CGGGCuuauggaCCGCcgGCGGCCGa -3'
miRNA:   3'- gGGUCGaGCCCGcg-----GGUG--UGCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.