miRNA display CGI


Results 81 - 100 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 141845 0.7 0.335297
Target:  5'- gCCAGCUCaGGC-UCCAUcaGgGGCCGCc -3'
miRNA:   3'- gGGUCGAGcCCGcGGGUG--UgCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 123750 0.7 0.342447
Target:  5'- cCCCacggGGCcucCGGGCGCCCcaGCGGCCc- -3'
miRNA:   3'- -GGG----UCGa--GCCCGCGGGugUGCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 24304 0.7 0.341727
Target:  5'- gCCGGCggcgCGGGaccuGCgCCGCACggugcuggccucgGGCCGCg -3'
miRNA:   3'- gGGUCGa---GCCCg---CG-GGUGUG-------------CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 102831 0.7 0.335297
Target:  5'- cCCCgacgAGC-CGGuCGCCC-CGCGGcCCGCg -3'
miRNA:   3'- -GGG----UCGaGCCcGCGGGuGUGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 69239 0.7 0.333173
Target:  5'- -gCAGCUCGGGgagcaGCCCuccgccggcgcccaGCAgCGGCUGCu -3'
miRNA:   3'- ggGUCGAGCCCg----CGGG--------------UGU-GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 41164 0.7 0.335297
Target:  5'- ---uGCgUCGGG-GUCCACGCGGgCCGCg -3'
miRNA:   3'- ggguCG-AGCCCgCGGGUGUGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 50581 0.7 0.352642
Target:  5'- gCCguGCU-GGGCGCUgcgguguacgcgcugCACACGGCCcugGCg -3'
miRNA:   3'- -GGguCGAgCCCGCGG---------------GUGUGCCGG---CG- -5'
5777 5' -64.1 NC_001806.1 + 79503 0.7 0.356334
Target:  5'- -aCGGCUcgcgaagcacgacCGGGCGUCCcggccgaaagcACGCGGCCGg -3'
miRNA:   3'- ggGUCGA-------------GCCCGCGGG-----------UGUGCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 59493 0.7 0.357076
Target:  5'- --aGGCUCGGGUGuCCCGgACcGUCGCa -3'
miRNA:   3'- gggUCGAGCCCGC-GGGUgUGcCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 3312 0.7 0.328255
Target:  5'- -gCGGCggggaagCGGG-GCCCGCGggucccucCGGCCGCg -3'
miRNA:   3'- ggGUCGa------GCCCgCGGGUGU--------GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 150664 0.7 0.327557
Target:  5'- gUUGGC-CGGGC-CCCGCcgcgcugGCGGCCGCc -3'
miRNA:   3'- gGGUCGaGCCCGcGGGUG-------UGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 1515 0.7 0.327557
Target:  5'- cUCCAGCagggcgCGGGCGCaaaagucCCucCGCGGcCCGCg -3'
miRNA:   3'- -GGGUCGa-----GCCCGCG-------GGu-GUGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 22774 0.7 0.328255
Target:  5'- gCCgGGCgcc-GCGCCCAgGcCGGCCGCg -3'
miRNA:   3'- -GGgUCGagccCGCGGGUgU-GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 1677 0.7 0.375202
Target:  5'- gUCCGGCgcgcCGGGCGCCaugGCGucggugguccccgaGGCCGCc -3'
miRNA:   3'- -GGGUCGa---GCCCGCGGg--UGUg-------------CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 117689 0.7 0.372138
Target:  5'- --aAGCUCGGGgcccgaGCCCGCGuCGGCCc- -3'
miRNA:   3'- gggUCGAGCCCg-----CGGGUGU-GCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 136363 0.7 0.364553
Target:  5'- aCCCggGGC-CGGcGCGCUC-CGCGGCCuccGCg -3'
miRNA:   3'- -GGG--UCGaGCC-CGCGGGuGUGCCGG---CG- -5'
5777 5' -64.1 NC_001806.1 + 41718 0.7 0.364553
Target:  5'- cCCCGGgacuggCGGGCGCaaACGCGGgccacCCGCg -3'
miRNA:   3'- -GGGUCga----GCCCGCGggUGUGCC-----GGCG- -5'
5777 5' -64.1 NC_001806.1 + 23823 0.7 0.364553
Target:  5'- cCCCuGCgcgccUCGGGCccgcuGCgCCGCAUGGCgGCc -3'
miRNA:   3'- -GGGuCG-----AGCCCG-----CG-GGUGUGCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 23223 0.7 0.357076
Target:  5'- gCCAGCgcacCGGaCGCCgccgacgcgCugGCGGCCGCc -3'
miRNA:   3'- gGGUCGa---GCCcGCGG---------GugUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 147807 0.69 0.419848
Target:  5'- gCCUGGCaUGGGCGCCgCGgGgGGCCuGUg -3'
miRNA:   3'- -GGGUCGaGCCCGCGG-GUgUgCCGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.