Results 101 - 120 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5777 | 5' | -64.1 | NC_001806.1 | + | 119180 | 0.69 | 0.387627 |
Target: 5'- gCUCuGCUUGGcGCcgccgcCCCGC-CGGCCGCg -3' miRNA: 3'- -GGGuCGAGCC-CGc-----GGGUGuGCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 57059 | 0.69 | 0.401121 |
Target: 5'- cCCCGGCUgcgugcCGGGCuCCCcgagacuccacagaACAagGGCCGCu -3' miRNA: 3'- -GGGUCGA------GCCCGcGGG--------------UGUg-CCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 47044 | 0.69 | 0.403534 |
Target: 5'- uCCCGcGCcgUCGGGCGuCCCACACucucugGGCgGg -3' miRNA: 3'- -GGGU-CG--AGCCCGC-GGGUGUG------CCGgCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 46194 | 0.69 | 0.419022 |
Target: 5'- aCCCAGCggGuGGCgacuaagGCCCcCGCGGCCccgGCg -3' miRNA: 3'- -GGGUCGagC-CCG-------CGGGuGUGCCGG---CG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 82022 | 0.69 | 0.419848 |
Target: 5'- gUCCGGCaucuUCGGG-GCCCaugaaccgaaACGCGaGCUGCa -3' miRNA: 3'- -GGGUCG----AGCCCgCGGG----------UGUGC-CGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 151327 | 0.69 | 0.387627 |
Target: 5'- gCCGGCUCGGGCgggggGCUguC-CGGCCa- -3' miRNA: 3'- gGGUCGAGCCCG-----CGGguGuGCCGGcg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 98134 | 0.69 | 0.403534 |
Target: 5'- aUCAGCUCGcGGCccgggGCCUGCuACaGCCGCc -3' miRNA: 3'- gGGUCGAGC-CCG-----CGGGUG-UGcCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 118786 | 0.69 | 0.403534 |
Target: 5'- cCCCGGaCUCGGGaCGgCCGCAaacuuccaGGUCGa -3' miRNA: 3'- -GGGUC-GAGCCC-GCgGGUGUg-------CCGGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 59948 | 0.69 | 0.386843 |
Target: 5'- aCCCAGCUCuGccuuuuccaacauGCGCCgGCGCGGCa-- -3' miRNA: 3'- -GGGUCGAGcC-------------CGCGGgUGUGCCGgcg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 27073 | 0.69 | 0.387627 |
Target: 5'- gCCCGuGCcCGGGCccugGCCCGCGgagcCGGCCcgGCg -3' miRNA: 3'- -GGGU-CGaGCCCG----CGGGUGU----GCCGG--CG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 1723 | 0.69 | 0.395529 |
Target: 5'- gCCCGGC-CGuccaGCGCCggcaGCACGGCCcgGCg -3' miRNA: 3'- -GGGUCGaGCc---CGCGGg---UGUGCCGG--CG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 123195 | 0.69 | 0.395529 |
Target: 5'- aCCCc-C-CGGGuCGCCCGCAgGGUgGCg -3' miRNA: 3'- -GGGucGaGCCC-GCGGGUGUgCCGgCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 45279 | 0.69 | 0.403534 |
Target: 5'- cCUUAGCggCGGGagacgcggGCCCGCGCGgggaGCCGCc -3' miRNA: 3'- -GGGUCGa-GCCCg-------CGGGUGUGC----CGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 23106 | 0.69 | 0.403534 |
Target: 5'- gCCggGGCccUGGGC-CCCGCGCuGCCGCg -3' miRNA: 3'- gGG--UCGa-GCCCGcGGGUGUGcCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 3603 | 0.69 | 0.403534 |
Target: 5'- aCCCGGCgggcacCGcGCGCUCGCccgguGCGGCgGCg -3' miRNA: 3'- -GGGUCGa-----GCcCGCGGGUG-----UGCCGgCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 137645 | 0.69 | 0.410825 |
Target: 5'- aCCCugggguuGGCcgaGGGCGCCCugACGCGGuuGg -3' miRNA: 3'- -GGG-------UCGag-CCCGCGGG--UGUGCCggCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 30281 | 0.69 | 0.41164 |
Target: 5'- cCCCGGCcccCGGGgcggagccggcCGCCCGCcccGCGGaCGCg -3' miRNA: 3'- -GGGUCGa--GCCC-----------GCGGGUG---UGCCgGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 151700 | 0.69 | 0.417375 |
Target: 5'- --gGGCcCGGGCuGCCCGCcgccaccgcuuuaaAgGGCCGCg -3' miRNA: 3'- gggUCGaGCCCG-CGGGUG--------------UgCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 69103 | 0.69 | 0.419848 |
Target: 5'- gCCCGcGCUCGGccuguGCGCCCcCGgGGaCGCu -3' miRNA: 3'- -GGGU-CGAGCC-----CGCGGGuGUgCCgGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 147807 | 0.69 | 0.419848 |
Target: 5'- gCCUGGCaUGGGCGCCgCGgGgGGCCuGUg -3' miRNA: 3'- -GGGUCGaGCCCGCGG-GUgUgCCGG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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