miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 33743 0.73 0.246672
Target:  5'- gCCGGCUCuGcGGUGUCgGCgGCGGCUGCg -3'
miRNA:   3'- gGGUCGAG-C-CCGCGGgUG-UGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 35545 0.72 0.257459
Target:  5'- gCCCAgcgagccGCUCGGcGCGCCCG-GCG-CCGCg -3'
miRNA:   3'- -GGGU-------CGAGCC-CGCGGGUgUGCcGGCG- -5'
5777 5' -64.1 NC_001806.1 + 20342 0.72 0.258037
Target:  5'- -gCGGCaaggCGGGCgGCCC-UugGGCCGCc -3'
miRNA:   3'- ggGUCGa---GCCCG-CGGGuGugCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 119285 0.72 0.263879
Target:  5'- cCCCAcGCggGGGCGCCCGCAgacCCGCc -3'
miRNA:   3'- -GGGU-CGagCCCGCGGGUGUgccGGCG- -5'
5777 5' -64.1 NC_001806.1 + 150973 0.72 0.263879
Target:  5'- gCCC-GCUCGcGG-GCCCACGa-GCCGCg -3'
miRNA:   3'- -GGGuCGAGC-CCgCGGGUGUgcCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 3856 0.72 0.269827
Target:  5'- gCCCAGgUgGGGCacgGCCCGCGCcacGCUGCc -3'
miRNA:   3'- -GGGUCgAgCCCG---CGGGUGUGc--CGGCG- -5'
5777 5' -64.1 NC_001806.1 + 28169 0.72 0.272236
Target:  5'- cCCCAGCgcgaggugaggggcCGGGCGCCauguCugGGgCGCc -3'
miRNA:   3'- -GGGUCGa-------------GCCCGCGGgu--GugCCgGCG- -5'
5777 5' -64.1 NC_001806.1 + 6252 0.72 0.274663
Target:  5'- cCCCGGCUCGGGaucgggauCGCaucggaaagggaCACGCGGaCGCg -3'
miRNA:   3'- -GGGUCGAGCCC--------GCGg-----------GUGUGCCgGCG- -5'
5777 5' -64.1 NC_001806.1 + 102421 0.72 0.275882
Target:  5'- uCCguGUUCGuagcGGCcCCCGC-CGGCCGCg -3'
miRNA:   3'- -GGguCGAGC----CCGcGGGUGuGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 58993 0.72 0.275882
Target:  5'- aCCUGGCa-GGGCGCCCcCuccucCGGCUGCc -3'
miRNA:   3'- -GGGUCGagCCCGCGGGuGu----GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 77444 0.72 0.282046
Target:  5'- gCCCGcGCcCGGGCGUCCGCcccaccCGGCCa- -3'
miRNA:   3'- -GGGU-CGaGCCCGCGGGUGu-----GCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 147708 0.72 0.282046
Target:  5'- cCCCGGaggcGGCGCUCGCacgcacggggccACGGCCGCg -3'
miRNA:   3'- -GGGUCgagcCCGCGGGUG------------UGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 150889 0.72 0.282046
Target:  5'- gCCCGGgcacgggcCUCGGGC-CCCagGCACGGCC-Cg -3'
miRNA:   3'- -GGGUC--------GAGCCCGcGGG--UGUGCCGGcG- -5'
5777 5' -64.1 NC_001806.1 + 29855 0.72 0.284542
Target:  5'- gCCgCGGCUCGGacagcgccccccucgGCGCCCaucgggccACACGGCaGCa -3'
miRNA:   3'- -GG-GUCGAGCC---------------CGCGGG--------UGUGCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 23308 0.71 0.288319
Target:  5'- gCCCGGCcCGGcCGCCCGgagGCGGCgGCc -3'
miRNA:   3'- -GGGUCGaGCCcGCGGGUg--UGCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 3011 0.71 0.294701
Target:  5'- gCCAGCgcgUCGGcgGCGUCCgguGCGCuGGCCGCc -3'
miRNA:   3'- gGGUCG---AGCC--CGCGGG---UGUG-CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 33104 0.71 0.294701
Target:  5'- gCCGGCgagCGGGUccggacgggGCCCGgACcGCCGCg -3'
miRNA:   3'- gGGUCGa--GCCCG---------CGGGUgUGcCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 51386 0.71 0.294701
Target:  5'- cCCCGGag-GGGCuCCUuaGCGCGGCCGUg -3'
miRNA:   3'- -GGGUCgagCCCGcGGG--UGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 66766 0.71 0.294701
Target:  5'- cCCCAGCUC-GGCGUCCAggucCACGaaCGCa -3'
miRNA:   3'- -GGGUCGAGcCCGCGGGU----GUGCcgGCG- -5'
5777 5' -64.1 NC_001806.1 + 46431 0.71 0.301192
Target:  5'- gCCGcGgUCGGGCG-CCugGCGGCCauGCa -3'
miRNA:   3'- gGGU-CgAGCCCGCgGGugUGCCGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.